PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000151330

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 335aa MW: 36899 Da PI: 8.9407

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000151330	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.4	1.3e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C+l+p + p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q++ MDP0000151330 2 SCNGCRVLRKGCSDSCMLRPSLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTINPVNGAVGLLWTGNWHVCQAA 97 6*********************************************************************************************** PP DUF260 92 aelall 97 +e++l MDP0000151330 98 VETVLX 103 998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.41	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MSCNGCRVLR KGCSDSCMLR PSLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR 60 PVLFQSLLFE ACGRTINPVN GAVGLLWTGN WHVCQAAVET VLXGGTLRPI PELLGGASTP 120 DEASEADVGG VTISTDMWRL RDPSHNSGSS SRFTSSRSAR ASSPKRKRSA AXDESSTKLL 180 QPQQHADLDL RLTPTPSFKP KPKPETRRPG TPSMNSDESG VSTCFESGFE DQHPYSFILT 240 GHKPKXXXEQ AERNSHGTKK QRGNNPKTKP NPPRERRREX LEPKEQQHSN NGCGREAGRE 300 FLFGLVLLPS SLTPPQLAYN ELDQTLLPIN YYQPF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.5453	0.0	bud\| flower\| fruit\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008338422.2	1e-172	LOB domain-containing protein 37-like
Swissprot	Q9SN23	7e-80	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A498I0N0	1e-170	A0A498I0N0_MALDO; Uncharacterized protein
STRING	XP_008338422.1	1e-171	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	4e-74	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	MDP0000151330