PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000145603
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 491aa    MW: 55358.8 Da    PI: 5.0844
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000145603genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057181197117
                    EEETTTTEEESSHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                    y+Cp+Cgk+++  + L+
  MDP0000145603 181 YVCPNCGKRYNALDALQ 197
                    9**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134424.8296158IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SMARTSM005316.3E-5538229IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
Gene3DG3DSA:3.30.40.105.9E-21167226IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577832.81E-9167222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSIEPFNKLV KLTARAFYDD IPTKGENQPK TGRSDNRGIA VVVLDALSRC FDARRQWVRE  60
EDLAKDLKLH SKQLRRTLRF FEEEKLVTRD HRREVSFTCQ AGVPGYCSLQ TAKGAKVHNA  120
AVAATGDGPP VKEGEEKVKM HTHSYCCLDY AQIYDVVRYR LHRLRKKLKD ELEDKNTVQE  180
YVCPNCGKRY NALDALQLVS MEDEYFHCES CNGELVAESD KLASQEVVGD GDDNARRRRR  240
EKLKDLLQKM EVQLKPLMDQ INRVKDLSPP EFGSLQAWEA RASAARRAEN GESSAMDPSK  300
SSHGMGYGGT PMPFLGDTKV EVDFSGVEGK GKDIKSEADG TSLKVLPPWM IKQGMNLTKE  360
QRGEVKQEQK MDGSASVAAP EFSEDKKFST ENNEKNIQDE YLKAYYAALI KRQQEEEAKK  420
AQETQISDGP SAVSPNRRVG MKSKREDEGE DTVDWEEAPV TGNAENYKVH DLNVEADATA  480
DDEDDIDWEE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fyw_W3e-1112941376368TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5fz5_W3e-1112941376368TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5sva_h3e-1112941376368Transcription initiation factor IIE subunit alpha
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374716.10.0general transcription factor IIE subunit 1-like
TrEMBLA0A498JTL10.0A0A498JTL1_MALDO; Uncharacterized protein
STRINGXP_008374716.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2430811