PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000135416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 24624.5 Da PI: 9.5218 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.1e-09 | 6 | 36 | 13 | 45 |
HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwq 45 vda+++ G++ W+ a++++ gRt++ +k++w+ MDP0000135416 6 VDAHAKVGNR-WAEXAKRIP-GRTENAIKNHWN 36 79********.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.92 | 1 | 43 | IPR017930 | Myb domain |
CDD | cd00167 | 3.58E-6 | 6 | 39 | No hit | No description |
Pfam | PF00249 | 2.3E-7 | 6 | 36 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.73E-7 | 7 | 47 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 7 | 37 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
GREGXVDAHA KVGNRWAEXA KRIPGRTENA IKNHWNATKR RQTSKRKNKQ PEGNNGNHKN 60 KPHSSILQNY IRSKNLMNNS SNISNVSTST PTSSSTLSQN DPSKTHLNTL VTEPSDQSTT 120 SNCFGSPLNL ADSFYDELVF MQNFFTNNPH NLNHPQQPSN STDNNVKLIV SPMEPSQNPN 180 MYDFATTSTT NFPTNVWPNL PESDLDPRGK NDPFLVGCPP L |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008385072.2 | 1e-104 | transcription factor MYB119-like | ||||
TrEMBL | A0A498INN0 | 1e-100 | A0A498INN0_MALDO; Uncharacterized protein | ||||
STRING | XP_008385072.1 | 1e-102 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 1e-19 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000135416 |