PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000133412

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB

Protein Properties

Length: 288aa MW: 33221.3 Da PI: 8.9468

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000133412	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.7	6.2e-19	48	95	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+ +G g+W+++ar g++R +k+c++rw +yl MDP0000133412 48 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 95 79********************************************97 PP
2	Myb_DNA-binding	53.7	4.9e-17	101	145	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ ++vd+++++G++ W+tIar ++ gRt++++k++w+++ MDP0000133412 101 RGQITPHEERIIVDLHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 145 7888****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.816	43	99	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-30	45	142	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-16	47	97	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-17	48	95	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-24	49	102	IPR009057	Homeodomain-like
CDD	cd00167	2.98E-12	50	95	No hit	No description
PROSITE profile	PS51294	19.764	100	150	IPR017930	Myb domain
SMART	SM00717	1.1E-14	100	148	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-13	101	145	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-24	103	149	IPR009057	Homeodomain-like
CDD	cd00167	2.33E-10	105	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MIFLRDQMTR TSNSGKHRED FENDSKLTDG ITKSTYGLGL IEEEGWRKGP WTAEEDRLLI 60 EYVRVHGEGR WNSVARLAGL KRNGKSCRLR WVNYLRPDLK RGQITPHEER IIVDLHARWG 120 NRWSTIARSL PGRTDNEIKN YWRTHFKKKA AKAASDASEK VKTRLLRRQQ FYQQQQHQQL 180 NQADLKKIMA LLDENDNNKI PSCWPQVKPD SETSTTTVCP HTADQEQGFF SSMLHGNVYV 240 PEPASTNEEN FLWDGLWNLD DIHGNFNPTS ACATGKTSLH SNLVVPFC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-27	48	150	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028951929.1	0.0	myb-related protein 305-like
TrEMBL	A0A498HN30	0.0	A0A498HN30_MALDO; Uncharacterized protein
STRING	XP_009358046.1	1e-171	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1182	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13480.1	1e-80	myb domain protein 79

Link Out ? help Back to Top
Phytozome	MDP0000133412