PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000133262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 23080.5 Da PI: 8.7915 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.6e-13 | 36 | 78 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A+eYI++L MDP0000133262 36 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQEL 78 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.507 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-18 | 30 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.16E-13 | 32 | 83 | No hit | No description |
SMART | SM00353 | 5.9E-15 | 35 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-16 | 35 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-11 | 36 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAVVRGSWGL DEAFSGYYDS SSPDGAASSM ASKNIVSERN RRKKLNERLF ALRAVVPNIS 60 KMDKASIIKD AIEYIQELHE QERRIQTEIV ELESGKSNKN QGSDFEQDLP VLLRSKKKKI 120 DQIYDSEGSR TSTIEILELR VTYMGEKTVV VSLTCSKRTD TMVKLCEVFE SLKLKIITAN 180 ITSFNGRVLK TVFVEVSCFF LTTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 34 | 109 | 9 | 78 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 34 | 109 | 9 | 78 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 34 | 109 | 9 | 78 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 34 | 109 | 9 | 78 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 34 | 109 | 9 | 78 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 34 | 109 | 9 | 78 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 34 | 109 | 9 | 78 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 34 | 109 | 9 | 78 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14011 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008358594.2 | 1e-135 | transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 3e-82 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A498I947 | 1e-137 | A0A498I947_MALDO; Uncharacterized protein | ||||
STRING | XP_008358594.1 | 1e-134 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 3e-87 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000133262 |