PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000132040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NF-YB | ||||||||
Protein Properties | Length: 269aa MW: 29402 Da PI: 8.2528 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 150.8 | 2.6e-47 | 20 | 103 | 2 | 85 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 reqdrflPianvsrimkk lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+ +e k+ MDP0000132040 20 REQDRFLPIANVSRIMKKGLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEEMEGEKM 103 89**************************************************************************99987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.88E-32 | 14 | 95 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.1E-44 | 16 | 99 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-27 | 25 | 89 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.4E-11 | 53 | 71 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 56 | 72 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.4E-11 | 72 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MADSDNDSGG GGGGTREQQR EQDRFLPIAN VSRIMKKGLP ANAKISKDAK ETVQECVSEF 60 ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEEEMEG EKMTISTNTS AGTGTGMSAG 120 HGRHAVRYHR DHEREQLYVH GHGAASGSIN GMYGVMSTQS TTMMMMGHQQ HHHHEGHLYG 180 SGSRPSTGHG RPRGKNSSSS LNGKALLTGE ADLQSEVAMA TCLPPPLCWV CVSLVLQSEI 240 TMAINSYFSR VRKGIKHYKV WKQFGLQNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 3e-39 | 20 | 106 | 2 | 88 | Transcription factor HapC (Eurofung) |
4g92_B | 3e-39 | 20 | 106 | 2 | 88 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ379398 | 8e-65 | FQ379398.1 Vitis vinifera clone SS0AEB10YI23. | |||
GenBank | FQ389757 | 8e-65 | FQ389757.1 Vitis vinifera clone SS0AEB19YM07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009352424.1 | 1e-120 | PREDICTED: nuclear transcription factor Y subunit B-3-like | ||||
TrEMBL | A0A498K2H3 | 1e-140 | A0A498K2H3_MALDO; Uncharacterized protein | ||||
STRING | XP_009352424.1 | 1e-120 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF37900 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 4e-55 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000132040 |