PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000129882
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 351aa    MW: 38122.7 Da    PI: 9.9738
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000129882genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.6e-31279336359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D y+WrKYGqK++kgs++pr+YY+C+s+ gC ++k+ver+ +dp+++++tYeg+H+h+
  MDP0000129882 279 DDYSWRKYGQKPIKGSPHPRGYYKCSSQrGCLARKHVERAVDDPTMLIVTYEGDHDHS 336
                    99************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.1E-16229275IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-31266336IPR003657WRKY domain
PROSITE profilePS5081130.389272338IPR003657WRKY domain
SuperFamilySSF1182904.97E-26274336IPR003657WRKY domain
SMARTSM007746.2E-36277337IPR003657WRKY domain
PfamPF031064.9E-26279335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMGLVDSFAA RMEENAVEEA ASAGIQSVEK FISLISEHHQ STSSNSEAGT EYKAVADMAV  60
TKFRKVISLL DKGSTGHARF RKAPVTLSXP PPPPVPPKTI TQILRPSISE PHDQKTEQXS  120
VFRTEQSSAF KVYCPKPVVR LPPLPQNPHL KXTPVVLTNG IGCSERKMDS AAATTINFSP  180
SAPISVANSF ISSLTTGDPA EQSISSGFQF TNMSQSSSGR PPLSSSSLKR KCSSVDNVSR  240
LRCGSTTGRC HCSKKRKSKV KRVIRVPAIS MKLADIPPDD YSWRKYGQKP IKGSPHPRGY  300
YKCSSQRGCL ARKHVERAVD DPTMLIVTYE GDHDHSLGVT EPTAALVLES S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21265337273WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.165751e-58fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365106.20.0probable WRKY transcription factor 7
SwissprotQ9STX01e-103WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A498JA910.0A0A498JA91_MALDO; Uncharacterized protein
STRINGXP_008365106.10.0(Malus domestica)
STRINGXP_008378007.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-86WRKY DNA-binding protein 7