PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000129026 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NF-YC | ||||||||
Protein Properties | Length: 222aa MW: 24874.2 Da PI: 10.6862 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 41.3 | 3.5e-13 | 117 | 204 | 12 | 99 |
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +++++k ++P+ r+++i++++ +is +a l+ ka e f+ ++ s + + +r+++ +a++v++ + +dfl d vp++ MDP0000129026 117 DEEEVKAYTFPMERVRRIIRSEYSDLRISNDAVFLINKATEKFLEKFCEESHACCVKDRRKAIAYKHLATVVSKRKRYDFLSDYVPEK 204 56799******************999***********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.44E-18 | 110 | 203 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-16 | 125 | 188 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.1E-21 | 126 | 203 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MATPKKDTPP NKTKEAKKPS TKSPPPKKNQ QTKKPTTAKA KTPEKKKPSS AKKSTNINKI 60 TSNGNARESD VEAVPSPSSE SRRGAEQNGG KFTKTPTPKS KKGTEKGKRK REGEXADEEE 120 VKAYTFPMER VRRIIRSEYS DLRISNDAVF LINKATEKFL EKFCEESHAC CVKDRRKAIA 180 YKHLATVVSK RKRYDFLSDY VPEKVKAEDA LAKRKLAEAK AG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 192 | RRKAIAYKHLATVVSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23416 | 0.0 | cell culture |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008358413.2 | 1e-157 | uncharacterized protein LOC103422153 | ||||
TrEMBL | A0A498KGE0 | 1e-155 | A0A498KGE0_MALDO; Uncharacterized protein | ||||
STRING | XP_008358413.1 | 1e-156 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 6e-29 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000129026 |