PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000119446

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 378aa MW: 42949.9 Da PI: 5.4439

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000119446	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	5e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yL++kveg ++el evi+ +d+yk++Pw+Lp k + ++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++ MDP0000119446 6 LPPGFRFHPTDEELVGYYLHRKVEGLEFEL-EVIPVIDLYKFDPWELPeKsFLPRRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC 100 79**************************.99**********95334455788********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + g +ktLvfy+grap g +tdW+mheyrl MDP0000119446 101 -QSGVXGYRKTLVFYRGRAPLGDRTDWIMHEYRL 133 .8889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-60	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.874	6	156	IPR003441	NAC domain
Pfam	PF02365	5.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MGGASLPPGF RFHPTDEELV GYYLHRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR 60 DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSGVXGYRKT LVFYRGRAPL 120 GDRTDWIMHE YRLNDDLAQG TSGHQGVFAL CRVVKKNEHA HKTHDSHGEP KAKRVGSASS 180 SGEDMTSTRI LKEPLSISAD TSSQASYLHX ESRYSSRATS PHEVNXMAEF EPASRETNPA 240 DFWVSPDLIL DSSKLSQTCX LQDYPQLQKA MPNYFQQYEF PSTMSPWQSY EPRESPSSSY 300 SNFTGDLKMA DDVNQMGGMS PFSGHTDYMG YYGNEEMQFE GSETWDGQAL ICRQVSADGS 360 LGELGGLWLQ EDNMVIVM

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MGGASLPPGF RFHPTDEELV GYYLHRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSGVXGYRKT LVFYRGRAPL  120
GDRTDWIMHE YRLNDDLAQG TSGHQGVFAL CRVVKKNEHA HKTHDSHGEP KAKRVGSASS  180
SGEDMTSTRI LKEPLSISAD TSSQASYLHX ESRYSSRATS PHEVNXMAEF EPASRETNPA  240
DFWVSPDLIL DSSKLSQTCX LQDYPQLQKA MPNYFQQYEF PSTMSPWQSY EPRESPSSSY  300
SNFTGDLKMA DDVNQMGGMS PFSGHTDYMG YYGNEEMQFE GSETWDGQAL ICRQVSADGS  360
LGELGGLWLQ EDNMVIVM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	5	162	16	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-54	5	162	16	171	NAC domain-containing protein 19
4dul_B	2e-54	5	162	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373551.2	0.0	NAC domain-containing protein 71
Swissprot	O49697	1e-102	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A498JMN7	0.0	A0A498JMN7_MALDO; Uncharacterized protein
STRING	XP_008373551.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6722	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-104	NAC domain containing protein 71

Link Out ? help Back to Top
Phytozome	MDP0000119446

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]