PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_97786g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 344aa MW: 38747.5 Da PI: 6.3737 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.8 | 9.4e-14 | 114 | 157 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR++++s f++L +llP++ K +K++i+e+A+ YIk Lq MA_97786g0010 114 TERERRKKMRSMFSNLHSLLPHL----PAKADKSTIVEEAISYIKTLQ 157 6*********************6....39******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.005 | 106 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-15 | 110 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.71E-13 | 111 | 161 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 111 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 114 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-11 | 114 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MMAQFRMNYN CSDNHLGEQD HEKYKLQSIN IAQDIDSLSN DLQEQYHMEY CNRQESVTEP 60 NLDHDQASAG CKPREPKSID HKKSAQALKL GELGLGNSLM KSIEPEDQGI HIWTERERRK 120 KMRSMFSNLH SLLPHLPAKA DKSTIVEEAI SYIKTLQQSL HVLENQRLDK ARAASTLEFE 180 LSSTFHEMQQ QHHVSTATMR SASEAPAFYH PLTAECSASS GFEPWISRQY SRTISTGSPA 240 IDHCFFQTWS SPNVVLSVCG DDAHMMICSS PPKQGLLTTI FYTLEKHKVD VVTAHISSDS 300 CRSMYMIHAQ AHAMVNGGDQ FLESKASEEA FRSAAGELVF YLSS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF083486 | 0.0 | EF083486.1 Picea sitchensis clone WS02718_C06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NQC2 | 0.0 | A9NQC2_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1226 | 15 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 3e-45 | bHLH family protein |