PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_67041g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | AP2 | ||||||||
Protein Properties | Length: 386aa MW: 42654.4 Da PI: 7.3088 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 2.1e-12 | 26 | 76 | 10 | 55 |
AP2 10 kkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 +++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g MA_67041g0010 26 RWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 76 579*********766644468557*************************98 PP | |||||||
2 | AP2 | 25.9 | 2.5e-08 | 119 | 165 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaar 50 s+y+G +++g+W+A+ + g +++fslg+ t eeAa+a++ MA_67041g0010 119 SKYRGLAKQSQTGKWEAS---F---GrvlGNRYFSLGSCSTSEEAAAAYEMSQ 165 79****************...8...555446******************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.187 | 17 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-16 | 23 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-13 | 25 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-8 | 26 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-12 | 26 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-4 | 119 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-7 | 119 | 179 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 10.758 | 120 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-4 | 120 | 184 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-4 | 120 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MSNVSSGHST HHQGHKKLIG CKRVLRWTGR YEAHLWDKST WNQNQNKKGK QVYLGAYDEE 60 EAAARAYDLA ALKYWGPGTL INFPVSDYAR DIEEMQSISR EDFLASLRRK SSGFSRGMSK 120 YRGLAKQSQT GKWEASFGRV LGNRYFSLGS CSTSEEAAAA YEMSQGEYRG FGMVRNIDLS 180 SYIRWWQPNK SLEVEPSAPR HMDEAHSMSE ERHTQGDEPE TPQWPGQACE PYQLPSLGVP 240 NNGKHNPSPV TALSILHQSS SFKQMLEKAS AKKGKSDQDM NAGDNPENMQ LEKGKGKNCL 300 AEDTNGSKEF GCHSGAYQPP GQTSTIFPFA QVQSAPPIQE IFPFAQVQSA PPIQDCNTTA 360 PVSDSLWTNF VPTTGGVALA NAVSIC |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ817357 | 0.0 | KJ817357.1 Larix gmelinii var. olgensis x Larix kaempferi WRI2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021281730.1 | 1e-91 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
TrEMBL | A0A171PZK2 | 0.0 | A0A171PZK2_9SPER; WRI2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 5e-66 | AP2 family protein |