PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_61649g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bZIP

Protein Properties

Length: 493aa MW: 51790.8 Da PI: 10.0021

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_61649g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.8	1.4e-14	412	461	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r+rr++kNRe+A rsR+RK+a++ eLe +v +L++eN++Lkk+ e + MA_61649g0010 412 RRQRRMIKNRESAARSRARKQAYTVELEAEVNQLKEENTKLKKQQAETAE 461 79****************************************76555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-14	405	462	No hit	No description
SMART	SM00338	1.3E-15	408	472	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.3	410	455	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-10	412	460	No hit	No description
CDD	cd14707	1.48E-26	412	466	No hit	No description
Pfam	PF00170	6.7E-13	412	464	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	415	430	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MGSQTESRVM VSSHGAMTPA LQGGAKMGGF PLARQASIYS LTLDEFQNSL GEPGKNFGSM 60 NMDEFLKNIW TAEESQAMAA AMGAVEGGNG GNLQRQGSLQ RQGSLTLPRT LSRRTVDDVW 120 REIHKENSDG NGNAPAGQAR QPTFGEMTLE DFLVKAGVVR EEAEQGGGQS FGVFRNALDG 180 EFAANLAERN GDNRLCIGNS LGLGFSERGH RNGEVGNNKS GAGGVSGLSL SPTNVLPNHA 240 AMDMVNLDAF KHQQQQTDWL NNHYRNATAA AFAQQQHQQQ QQQLLHHQAA AEAAAAAAAY 300 ATNVKRAGGN AALIGQGGLG GGLALGGTMG NGGLGAGLGG VGGLGAGLGG PFGPSALAIG 360 AGSPASPLSS DDGVGPSHVD NPTISPVPYG LDGGMRGRKR GLDGPVEKVV ERRQRRMIKN 420 RESAARSRAR KQAYTVELEA EVNQLKEENT KLKKQQAETA ERRKKQILEV MAPVTKQLGT 480 KTRALRRTLS GPW

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MGSQTESRVM VSSHGAMTPA LQGGAKMGGF PLARQASIYS LTLDEFQNSL GEPGKNFGSM  60
NMDEFLKNIW TAEESQAMAA AMGAVEGGNG GNLQRQGSLQ RQGSLTLPRT LSRRTVDDVW  120
REIHKENSDG NGNAPAGQAR QPTFGEMTLE DFLVKAGVVR EEAEQGGGQS FGVFRNALDG  180
EFAANLAERN GDNRLCIGNS LGLGFSERGH RNGEVGNNKS GAGGVSGLSL SPTNVLPNHA  240
AMDMVNLDAF KHQQQQTDWL NNHYRNATAA AFAQQQHQQQ QQQLLHHQAA AEAAAAAAAY  300
ATNVKRAGGN AALIGQGGLG GGLALGGTMG NGGLGAGLGG VGGLGAGLGG PFGPSALAIG  360
AGSPASPLSS DDGVGPSHVD NPTISPVPYG LDGGMRGRKR GLDGPVEKVV ERRQRRMIKN  420
RESAARSRAR KQAYTVELEA EVNQLKEENT KLKKQQAETA ERRKKQILEV MAPVTKQLGT  480
KTRALRRTLS GPW

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ913522	0.0	HQ913522.1 Pinus taeda ABI5-like protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9M7Q5	8e-44	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A0C9S8B3	0.0	A0A0C9S8B3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11777_3031 transcribed RNA sequence

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3984	10	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.2	4e-43	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]