PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_584554g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 554aa MW: 62554.6 Da PI: 6.6246 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C+k F + L H+r+H MA_584554g0010 29 YLCKICSKKFVSGRALGGHMRVH 51 56*******************99 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 305 | 327 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k+Fs+++ L H +H MA_584554g0010 305 FKCTTCNKVFSSHEALGGHRASH 327 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.9E-5 | 27 | 53 | No hit | No description |
SMART | SM00355 | 0.026 | 29 | 51 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.492 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.6E-7 | 29 | 51 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 200 | 132 | 154 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.2E-8 | 304 | 329 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 305 | 327 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.783 | 305 | 332 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 307 | 327 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.22E-5 | 398 | 426 | No hit | No description |
Pfam | PF13912 | 6.5E-12 | 400 | 425 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2 | 401 | 423 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.723 | 401 | 428 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 403 | 423 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MATVDILYPR SQAMEVFNKQ EEREHQLSYL CKICSKKFVS GRALGGHMRV HAPASMAADK 60 LTETEFKKSK KPRDSDDKSM EDKDDKEGMD GNGRNLMYAL RRNPKRSWRF ADRDYSFLLE 120 YEFDSKSIDS SINCDPREKE FSSRKGLFGH MKFHSETHQD SGDADLEESQ KHETQDKEND 180 RSESYAEIEL DHPSGNSSRF DKWMQGKIFK RPRYAPQLNP LEQFGLATND EEKDVAMCLV 240 MLASGVNTAQ IPQFQMGTEE LGSGDLKLPN TGSHLPKCIR KKPKYKKIDG DAGLYNDDEV 300 KKARFKCTTC NKVFSSHEAL GGHRASHNKV KGCFWQIEEE KESQEEDISD EELHTGSDSQ 360 LPGNFHKPSP KERTKDSCVK ARDETRTMKA TAFSVKKSRV HECSICHRDF ASGQALGGHK 420 RCHWGSARAS DTTTSTICSN KETPMQQQMP ARVEVLDLNL PATVDDDCDA GNHNTLSGNP 480 VDSHGASYAQ VYSPPYSQSW LMSLNCPKQG LLLYSNNTHL DQDEEVDSKL VKGIGFGRGY 540 DSDFPARAQP WLQL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9RQJ1 | 1e-162 | A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 9e-21 | C2H2 family protein |