PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_2814g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family E2F/DP
Protein Properties Length: 500aa    MW: 55683.8 Da    PI: 9.2953
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_2814g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.91.5e-2288153171
       E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                   rkeksL+ll+ +fl+ + +++ + ++l+e+a +L    v  +rRRiYDi+NVLe+++++ +k+kn+++wkg
  MA_2814g0010  88 RKEKSLGLLCVNFLNHYTQEQVDSISLDEAACRL---GV--ERRRIYDIVNVLESVGVLVRKAKNRYTWKG 153
                   79*****************999************...**..****************************98 PP
2E2F_TDP72.73.9e-23231311171
       E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                   r+eksL+lltqkf++l+  +++++v+l+++a+ L+ e     + k+k+RR+YDi+N+L++lnliek     ++k++++w g
  MA_2814g0010 231 RREKSLGLLTQKFVQLFLVTQAQVVSLEDAARLLLGEckesaKLKTKVRRLYDIANILSSLNLIEKthnteNRKPAFKWLG 311
                   689***************************************99**********************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-2584154IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.76E-1687151IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-2788153IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-1989153IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-24227313IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.0E-32231311IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-19233311IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.04E-13233312IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDLAGGWRLI SRYGGRSLAR IFSLLFHQDL FARSAIGFEN RKVEVVRLRN RSFEASIRRK  60
GIVFCGLNAE VGMPSFGEPD GRAQAYSRKE KSLGLLCVNF LNHYTQEQVD SISLDEAACR  120
LGVERRRIYD IVNVLESVGV LVRKAKNRYT WKGYEGIPKA LEKLREAALN GEVLNGVKNL  180
SDLSEIKMNN VRVCLASDDE EEEHSSNENS CPPENAKRQG FRILHRSADC RREKSLGLLT  240
QKFVQLFLVT QAQVVSLEDA ARLLLGECKE SAKLKTKVRR LYDIANILSS LNLIEKTHNT  300
ENRKPAFKWL GVKDNAKYTA EMATKKRQFG TVLSTNTNIT SVPKAKRGPD SHRVSEQKGN  360
DSAGAAAGSS PSLKPSNLTG PGFPSRNRDY SAGFSFGPFC PFRLQQQCLA SIYPAQGFDR  420
VNERRDENQD REGSSQESEV TNPFPLQYQN EAMDQIFAHC MNAWKSWYLQ AAVSATANAT  480
SASSPVPSGH EPSDSVTEAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-42873033228Transcription factor E2F8
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1087090.0BT108709.1 Picea glauca clone GQ03125_K22 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.23e-79DP-E2F-like 1