PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_122255g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 266aa MW: 30424.2 Da PI: 6.0587

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_122255g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.5	3.6e-13	27	81	27	83
trihelix 27 kkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W+ +s+++++ ++r++ qC++kwe l +ykkike+e++ ++++s +++ + MA_122255g0010 27 VSDKWSIISNRCAASHVQRTAGQCRKKWELLISDYKKIKEWERQ--CGVESYWSLSH 81 4679***************************************8..99999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.841	6	58	IPR017877	Myb-like domain
Pfam	PF13837	1.0E-8	29	78	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MLVLVREKWA VENELQLSPS KSQFTGVSDK WSIISNRCAA SHVQRTAGQC RKKWELLISD 60 YKKIKEWERQ CGVESYWSLS HSAKREHKLP FYLERELFDV MDANLDKTPT ACPDATFDSM 120 DVAADSLFTA NDDSQDDMVK MQDPTASGSG NEPLDSTIRH KRRRCSSEDE RDHGIISVLR 180 ENCQNIQAVI RETTQAQMCS SQLDRDMYWK GIEVNKQVQL QTSELDRELR RKQGQDLIDV 240 LGGLVNAVNR LVDTIQNKSS RQLNGP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF086114	0.0	EF086114.1 Picea sitchensis clone WS0281_E13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NXN9	0.0	A9NXN9_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP7482	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-24	Trihelix family protein