PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_112057g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 826aa    MW: 90733.8 Da    PI: 6.1831
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_112057g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-18663457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  MA_112057g0010  6 YVRYTAEQVEALERLYNDCPKPSSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 63
                    5789****************************************************97 PP
2START155.83.6e-491513582204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++++++ka++++  W +++ +++g++++ +++ s++++g a+ra+g+   ++   v+++l+d++ W ++++   +l +  +g  g++++ 
  MA_112057g0010 151 IAEETLTQFLSKATETAVDWIQMPGMKPGPDSIGIVTISNSCTGVAARACGFAGLEPS-KVADILKDRPAWLHDCRCLNVLTAFPTGkgGTVEVL 244
                     7899******************************************************.9999999999************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+p Rd +++Ry+  l++g++v++++S++  q+ p+    +++vRa++lpSg+li+p+++g++ +++v+h+dl+ +++++++r+l+
  MA_112057g0010 245 YTQMYAPTTLAPaRDLLTLRYTSLLEDGSLVVCERSLTGIQSGPNmpsVQHFVRAQMLPSGYLIRPCEGGGCIIHIVDHMDLEPWSVPEVIRPLY 339
                     ***************************************999999888899******************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+++ ++k++  +l++++
  MA_112057g0010 340 ESSAVLAQKMTITALRHLR 358
                     ***********99999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.175164IPR001356Homeobox domain
SMARTSM003892.7E-14268IPR001356Homeobox domain
CDDcd000863.26E-15565No hitNo description
SuperFamilySSF466898.13E-16567IPR009057Homeodomain-like
PfamPF000461.1E-15663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-17763IPR009057Homeodomain-like
CDDcd146861.74E-65796No hitNo description
PROSITE profilePS5084822.864141369IPR002913START domain
CDDcd088756.46E-70145359No hitNo description
SMARTSM002342.9E-36150360IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-22150356IPR023393START-like domain
SuperFamilySSF559617.0E-37150362No hitNo description
PfamPF018522.4E-46151358IPR002913START domain
PfamPF086706.4E-51683825IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MEAGKYVRYT AEQVEALERL YNDCPKPSSL RRQQLIRECP ILSHIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRQQIQ TVSIATTDTS  120
CESVVTSGPH PHHLTPQHPP RDASPAGFLS IAEETLTQFL SKATETAVDW IQMPGMKPGP  180
DSIGIVTISN SCTGVAARAC GFAGLEPSKV ADILKDRPAW LHDCRCLNVL TAFPTGKGGT  240
VEVLYTQMYA PTTLAPARDL LTLRYTSLLE DGSLVVCERS LTGIQSGPNM PSVQHFVRAQ  300
MLPSGYLIRP CEGGGCIIHI VDHMDLEPWS VPEVIRPLYE SSAVLAQKMT ITALRHLRQV  360
AQEVSGEVVL GWGRQPAALR AFSQRLCRGF NDAVNGFVDD GWSLLGSDGV EDVIIAINSS  420
PSKFLGSQLA SSDGISALNG GILCAKASML LQNVPPALLV RFLREHRSEW ADCNVDAYSS  480
ATMKANAYNV PGSLGGITGS QVILPLAHTV EHEEFLEVIK LEGQGLTHEE ALLSKDMFLL  540
QLCSGIDEHA VGFCAQLVFA PIDASFADDA PLLPSGFRVI PLESGSDASP PNRTLDLASA  600
LEVGSAGTRA SGDCGDSPYN LRSVLTIAFQ FTYQNHNHVR DSVAAMARQY VRHVIASVQR  660
VAIALAPSLQ SPHPPPGTPE ALTLARWICE SYRMHLGLEL IESSSETNES VLKLLWHHSD  720
GIMCCSWKTL PVFTFANQAG LDMLETTLVA LQDISLEKIL DENGRKRLCS DFTQIMQQGY  780
AYLPAGICIS SMGRPVSYDR AIAWKVLNDE DVTHCISFMF VNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3919150.0HQ391915.1 Picea glauca class III homeodomain leucine zipper protein (HB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853643.20.0homeobox-leucine zipper protein ATHB-15
RefseqXP_020528699.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLE7DX250.0E7DX25_PICGL; Class III homeodomain leucine zipper protein
STRINGERN151100.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]