PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10431811g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 351aa    MW: 38634.1 Da    PI: 5.5835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10431811g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11187229855
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        Er+RR r+N+++ +Lr+l+P       +K++Ka+i+  A+ Y+++Lq
  MA_10431811g0010 187 SERKRRGRLNERLYTLRSLVPRI-----TKMDKASIVGDAISYVQDLQ 229
                       5*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.707179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-17184246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-16185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-13186233No hitNo description
Gene3DG3DSA:4.10.280.104.8E-16186246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9187229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MERESQRGVV DVMEQRAGGG GGGISTAYPN NSSYGHGIFD FNGLALMEAA AAAAGDHNGL  60
LFGTDLIAYG HLMICPQKPR LSSLHRDLFL FFTHGAAELL TRNEAPENLS AFPQAQVHNS  120
SFHSFGGLDA PCDPNGYGAT GTPVQGKVDT KFLDDYSSDE IDNLDEDDKS SKSSQYGRSS  180
ESKTLLSERK RRGRLNERLY TLRSLVPRIT KMDKASIVGD AISYVQDLQK QVKDIQAEIE  240
GLRSNLSGQN NSTPLDGGNS AVSDLDYEMQ LYEEGNTNHP LPLPNEPPTW QKLDLDVTKV  300
EDRTFHIRLY CKKNPGVLIR LMRALESIQL DFHNANLTSF DGHIIKTATV K
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1027360.0BT102736.1 Picea glauca clone GQ02013_D04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R8W43e-46A0A0D6R8W4_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-32FER-like regulator of iron uptake