PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10426489g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GRAS | ||||||||
Protein Properties | Length: 664aa MW: 73898.9 Da PI: 5.0251 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 433 | 2.3e-132 | 293 | 664 | 2 | 374 |
GRAS 2 velLlecAeavssgdle..laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +elL++cA++v+++d+ ++++l+a++++ +s +gdpmqRl ay++e+L arla+s+ +ykal+++e + s e l+++++++ev+P++k MA_10426489g0020 293 KELLIACAKVVADSDNDsfKIDKLIAEIRQVVSISGDPMQRLGAYMVEGLVARLASSGGIIYKALRCKEPT---SPELLSYMQVLYEVCPYFK 382 689********997766569**************************************************9...9****************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 f++++aN aI ea++ e+rvHiiDf+i+ G QW++L+qaLa+Rp+gpp++ iTg+++p s+ + le +g+rL+k+Ae+++vpfef++ v MA_10426489g0020 383 FGYMAANGAIAEAFKDEDRVHIIDFQIGLGSQWVTLIQALAARPRGPPRVCITGIDDPLSNyaRGGGLELVGKRLSKLAETCNVPFEFHP-VP 474 *********************************************************999888999************************.68 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +d+++++L+++ g alaVn+++qlh+++desv+++++rd+++++ k+l Pkv+++veqe+++n+++F+ rf+e+l+yy+a+f+sl+++lp MA_10426489g0020 475 VMGADVQVNMLKCQAGHALAVNFSFQLHHMPDESVNTSNHRDRIIRIAKGLAPKVLTLVEQESNTNTAPFFPRFMETLSYYTAVFESLDVTLP 567 899****************************************************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 res+eri+vE+++l+r+ivn++acegaer+erhe ++kW++r+++aGFkp+pls+ +++++k+ll+ + ++ y++ e++++l+lgW++rpL++ MA_10426489g0020 568 RESKERINVEQHCLARDIVNIIACEGAERVERHELMGKWKSRFTMAGFKPYPLSSIVNSTIKSLLEGYCQK-YSLLERDDTLYLGWSNRPLIA 659 *********************************************************************66.********************* PP GRAS 370 vSaWr 374 ++aW+ MA_10426489g0020 660 ACAWQ 664 ****6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.634 | 266 | 645 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.9E-130 | 293 | 664 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MNVQFKTELV ATSQNSQYVL DHPHKAFGTC LPDAGPSVAS NISVEQASGS HEWIHGTPKT 60 SYQNFPCSPQ EVISYGLGHS TRTHECYRND KYRMSDGSVE SSPLQDNDSL QSQRSTHEAP 120 PYSTGHSFYS SPSVQSCSSS GSPASPHVSQ NYPSGLHYFH SPQEPYGPAG SGHSGIEQEE 180 DLKYMLQELE TALLVSESDD PDNFGSMYEE QRFPEYSEWN VETMHDTTNN YCQSSSSVYP 240 KPEQVEVSSM TLNHVKVEIV NEVDLGTFCS STLNASEEQK QELEFDIPYG DVKELLIACA 300 KVVADSDNDS FKIDKLIAEI RQVVSISGDP MQRLGAYMVE GLVARLASSG GIIYKALRCK 360 EPTSPELLSY MQVLYEVCPY FKFGYMAANG AIAEAFKDED RVHIIDFQIG LGSQWVTLIQ 420 ALAARPRGPP RVCITGIDDP LSNYARGGGL ELVGKRLSKL AETCNVPFEF HPVPVMGADV 480 QVNMLKCQAG HALAVNFSFQ LHHMPDESVN TSNHRDRIIR IAKGLAPKVL TLVEQESNTN 540 TAPFFPRFME TLSYYTAVFE SLDVTLPRES KERINVEQHC LARDIVNIIA CEGAERVERH 600 ELMGKWKSRF TMAGFKPYPL SSIVNSTIKS LLEGYCQKYS LLERDDTLYL GWSNRPLIAA 660 CAWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-62 | 296 | 664 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115341 | 0.0 | BT115341.1 Picea glauca clone GQ03614_J13 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014504989.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_014504990.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_014504991.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A0D6QZI2 | 0.0 | A0A0D6QZI2_ARACU; Uncharacterized protein | ||||
STRING | XP_007142502.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1409 | 14 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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