PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10426489g0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 664aa    MW: 73898.9 Da    PI: 5.0251
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10426489g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4332.3e-1322936642374
              GRAS   2 velLlecAeavssgdle..laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                       +elL++cA++v+++d+   ++++l+a++++ +s +gdpmqRl ay++e+L arla+s+  +ykal+++e +   s e l+++++++ev+P++k
  MA_10426489g0020 293 KELLIACAKVVADSDNDsfKIDKLIAEIRQVVSISGDPMQRLGAYMVEGLVARLASSGGIIYKALRCKEPT---SPELLSYMQVLYEVCPYFK 382
                       689********997766569**************************************************9...9****************** PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                       f++++aN aI ea++ e+rvHiiDf+i+ G QW++L+qaLa+Rp+gpp++ iTg+++p s+  +   le +g+rL+k+Ae+++vpfef++ v 
  MA_10426489g0020 383 FGYMAANGAIAEAFKDEDRVHIIDFQIGLGSQWVTLIQALAARPRGPPRVCITGIDDPLSNyaRGGGLELVGKRLSKLAETCNVPFEFHP-VP 474
                       *********************************************************999888999************************.68 PP

              GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                          +d+++++L+++ g alaVn+++qlh+++desv+++++rd+++++ k+l Pkv+++veqe+++n+++F+ rf+e+l+yy+a+f+sl+++lp
  MA_10426489g0020 475 VMGADVQVNMLKCQAGHALAVNFSFQLHHMPDESVNTSNHRDRIIRIAKGLAPKVLTLVEQESNTNTAPFFPRFMETLSYYTAVFESLDVTLP 567
                       899****************************************************************************************** PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                       res+eri+vE+++l+r+ivn++acegaer+erhe ++kW++r+++aGFkp+pls+ +++++k+ll+ + ++ y++ e++++l+lgW++rpL++
  MA_10426489g0020 568 RESKERINVEQHCLARDIVNIIACEGAERVERHELMGKWKSRFTMAGFKPYPLSSIVNSTIKSLLEGYCQK-YSLLERDDTLYLGWSNRPLIA 659
                       *********************************************************************66.********************* PP

              GRAS 370 vSaWr 374
                       ++aW+
  MA_10426489g0020 660 ACAWQ 664
                       ****6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.634266645IPR005202Transcription factor GRAS
PfamPF035147.9E-130293664IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MNVQFKTELV ATSQNSQYVL DHPHKAFGTC LPDAGPSVAS NISVEQASGS HEWIHGTPKT  60
SYQNFPCSPQ EVISYGLGHS TRTHECYRND KYRMSDGSVE SSPLQDNDSL QSQRSTHEAP  120
PYSTGHSFYS SPSVQSCSSS GSPASPHVSQ NYPSGLHYFH SPQEPYGPAG SGHSGIEQEE  180
DLKYMLQELE TALLVSESDD PDNFGSMYEE QRFPEYSEWN VETMHDTTNN YCQSSSSVYP  240
KPEQVEVSSM TLNHVKVEIV NEVDLGTFCS STLNASEEQK QELEFDIPYG DVKELLIACA  300
KVVADSDNDS FKIDKLIAEI RQVVSISGDP MQRLGAYMVE GLVARLASSG GIIYKALRCK  360
EPTSPELLSY MQVLYEVCPY FKFGYMAANG AIAEAFKDED RVHIIDFQIG LGSQWVTLIQ  420
ALAARPRGPP RVCITGIDDP LSNYARGGGL ELVGKRLSKL AETCNVPFEF HPVPVMGADV  480
QVNMLKCQAG HALAVNFSFQ LHHMPDESVN TSNHRDRIIR IAKGLAPKVL TLVEQESNTN  540
TAPFFPRFME TLSYYTAVFE SLDVTLPRES KERINVEQHC LARDIVNIIA CEGAERVERH  600
ELMGKWKSRF TMAGFKPYPL SSIVNSTIKS LLEGYCQKYS LLERDDTLYL GWSNRPLIAA  660
CAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-622966648375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1153410.0BT115341.1 Picea glauca clone GQ03614_J13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504989.10.0scarecrow-like transcription factor PAT1
RefseqXP_014504990.10.0scarecrow-like transcription factor PAT1
RefseqXP_014504991.10.0scarecrow-like transcription factor PAT1
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0D6QZI20.0A0A0D6QZI2_ARACU; Uncharacterized protein
STRINGXP_007142502.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]