PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10426489g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GRAS | ||||||||
Protein Properties | Length: 433aa MW: 47875.1 Da PI: 4.5142 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 159.8 | 2.3e-49 | 290 | 433 | 2 | 146 |
GRAS 2 velLlecAeavssgdle..laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +elL++cA++v+++d+ ++++l+a++++ +s +gdpmqRl ay++e+L arla+s+ +ykal+++e + s e l+++++++ev+P++k MA_10426489g0010 290 KELLIACAKVVADSDNDsfKIDKLIAEIRQVVSISGDPMQRLGAYMVEGLVARLASSGGIIYKALRCKEPT---SPELLSYMQVLYEVCPYFK 379 689********997766569**************************************************9...9****************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146 f++++aN aI ea++ e+rvHiiDf+i+ G QW++L+qaLa+Rp+gpp++ iTg MA_10426489g0010 380 FGYMAANGAIAEAFKDEDRVHIIDFQIGLGSQWVTLIQALAARPRGPPRVCITG 433 *****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 30.222 | 263 | 433 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.9E-47 | 290 | 433 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MNVQFKTELV ATSQNSQYVL DHPHKAFGTC LPDAGPSVAS NISVEQASGS HEWIHGTPKT 60 SYQNFPCSPQ EVISYGLGHS TRTHECYRND KYRMSDGSVE SSPLQDNDSL QSQRSTHEAP 120 PYSTFYSSPS VQSCSSSGSP ASPHVSQNYP SGLHYFHSPQ EPYGPAGSGH SGIEQEEDLK 180 YMLQELETAL LVSESDDPDN FGSMYEEQRF PEYSEWNVET MHDTTNNYCQ SSSSVYPKPE 240 QVEVSSMTLN HVKVEIVNEV DLGTFCSSTL NASEEQKQEL EFDIPYGDVK ELLIACAKVV 300 ADSDNDSFKI DKLIAEIRQV VSISGDPMQR LGAYMVEGLV ARLASSGGII YKALRCKEPT 360 SPELLSYMQV LYEVCPYFKF GYMAANGAIA EAFKDEDRVH IIDFQIGLGS QWVTLIQALA 420 ARPRGPPRVC ITG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-21 | 296 | 433 | 26 | 164 | Protein SCARECROW |
5b3h_A | 5e-21 | 296 | 433 | 25 | 163 | Protein SCARECROW |
5b3h_D | 5e-21 | 296 | 433 | 25 | 163 | Protein SCARECROW |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115341 | 0.0 | BT115341.1 Picea glauca clone GQ03614_J13 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1409 | 14 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 3e-65 | GRAS family protein |