PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10157g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 314aa MW: 33852.1 Da PI: 6.5794 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.1 | 8.5e-15 | 130 | 176 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ + +Lr+llP+ +K +Ka+ L +++e++k+L MA_10157g0010 130 KSHSEAERRRRERINTHLGTLRSLLPST-----TKTDKASLLAEVIEHLKDL 176 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.685 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-12 | 130 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-14 | 131 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-14 | 131 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-13 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.86E-5 | 140 | 179 | No hit | No description |
CDD | cd04873 | 1.14E-6 | 214 | 282 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.2E-4 | 214 | 261 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSGSGSSGDA QFSPWSVPPI QWTSTAGIDQ RMLSCMAPNK EAPSSSYSGF HCGPLQFSYD 60 RLRESGAAVV YGSKSGVGFN GRECGMLQHR QLLANGHGGL FMDGFPAEMA NVAKMTTQEI 120 IDAKALAASK SHSEAERRRR ERINTHLGTL RSLLPSTTKT DKASLLAEVI EHLKDLKRQA 180 LEIAEESAVP TETDELTVDA VPSCGDGKSL VKASVCCDDR PELLSDLIKT LGTLGLCTIK 240 AEITTLGGRV KHELLIDSSN EDNTDYGPPS ISCVHDALKA VMERQNSEGS TTANKRQRLN 300 PFSSIHHIHD GRSI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 140 | ERRRRE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ047436 | 6e-69 | FJ047436.1 Pinus taeda isolate 4627 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047437 | 6e-69 | FJ047437.1 Pinus taeda isolate 4623 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047438 | 6e-69 | FJ047438.1 Pinus taeda isolate 4630 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047439 | 6e-69 | FJ047439.1 Pinus taeda isolate 4637 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047440 | 6e-69 | FJ047440.1 Pinus taeda isolate 4625 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047441 | 6e-69 | FJ047441.1 Pinus taeda isolate 4622 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047442 | 6e-69 | FJ047442.1 Pinus taeda isolate 4626 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047443 | 6e-69 | FJ047443.1 Pinus taeda isolate 4621 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047444 | 6e-69 | FJ047444.1 Pinus taeda isolate 4631 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047445 | 6e-69 | FJ047445.1 Pinus taeda isolate 4636 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047446 | 6e-69 | FJ047446.1 Pinus taeda isolate 4632 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047447 | 6e-69 | FJ047447.1 Pinus taeda isolate 4635 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047448 | 6e-69 | FJ047448.1 Pinus taeda isolate 4633 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047449 | 6e-69 | FJ047449.1 Pinus taeda isolate 4634 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047450 | 6e-69 | FJ047450.1 Pinus taeda isolate 4629 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047451 | 6e-69 | FJ047451.1 Pinus taeda isolate 4624 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | FJ047452 | 6e-69 | FJ047452.1 Pinus taeda isolate 4620 anonymous locus 0_11790_02 genomic sequence. | |||
GenBank | JQ261741 | 6e-69 | JQ261741.1 Pinus radiata isolate 4638 hypothetical protein (0_11790_02) gene, 3' UTR. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002978655.2 | 7e-71 | transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 2e-58 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A0C9QX51 | 1e-129 | A0A0C9QX51_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_1935_1396 transcribed RNA sequence | ||||
STRING | GSMUA_Achr1P21280_001 | 1e-68 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 7e-54 | bHLH family protein |
Publications ? help Back to Top | |||
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