PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10043304

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 488aa MW: 53677.3 Da PI: 9.5275

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10043304	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.4e-32	256	311	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Lus10043304 256 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 311 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-28	253	314	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.322	253	313	IPR017930	Myb domain
SuperFamily	SSF46689	6.27E-17	254	314	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-26	256	311	IPR006447	Myb domain, plants
Pfam	PF00249	8.7E-7	258	309	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009266	Biological Process	response to temperature stimulus
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010452	Biological Process	histone H3-K36 methylation
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:1903507	Biological Process	negative regulation of nucleic acid-templated transcription
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MASPSELSLD CKPHSHSLLL KSFSDQIVAN NAPPQDDQKH KLEEFLSRLE EERFKIDAFK 60 RELPLCMQLL TNAMESSRQQ LEAYRGSRQP AAVVLEEFIP MKNTVAPPPS SSDQIVMSME 120 NKANWMTTAQ LWSQDTKPAL HHEKDETFRQ DNNNSTMGFS VITERRNSCN GSTGAFLPFS 180 KERNNNDSNC TLALAASTDT SNKLDHREEE EEKIKCSDQP VNIINGFSSE SDGGGINVTA 240 AEAAAAAGGS NNSQRKARRC WSPDLHRRFV NALQMLGGSQ VATPKQIREL MKVDGLTNDE 300 VKSHLQKYRL HTRRPSPSPQ ASGGPPPQLV VLGGIWVPPE YAASHGGAHA FYGAATAHPP 360 PPSHFYSVPP PQDYYTAAGL PMQALPPPHT PPTLFLLLIL RQRPTTTSTT TTRSSSTRLL 420 RRRRPTAPDR IRTTGQPGTG RRALKMGSRR AGAGKQGRAE TMLAAMEERE KIERNAIGER 480 SPSNFNS*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MASPSELSLD CKPHSHSLLL KSFSDQIVAN NAPPQDDQKH KLEEFLSRLE EERFKIDAFK  60
RELPLCMQLL TNAMESSRQQ LEAYRGSRQP AAVVLEEFIP MKNTVAPPPS SSDQIVMSME  120
NKANWMTTAQ LWSQDTKPAL HHEKDETFRQ DNNNSTMGFS VITERRNSCN GSTGAFLPFS  180
KERNNNDSNC TLALAASTDT SNKLDHREEE EEKIKCSDQP VNIINGFSSE SDGGGINVTA  240
AEAAAAAGGS NNSQRKARRC WSPDLHRRFV NALQMLGGSQ VATPKQIREL MKVDGLTNDE  300
VKSHLQKYRL HTRRPSPSPQ ASGGPPPQLV VLGGIWVPPE YAASHGGAHA FYGAATAHPP  360
PPSHFYSVPP PQDYYTAAGL PMQALPPPHT PPTLFLLLIL RQRPTTTSTT TTRSSSTRLL  420
RRRRPTAPDR IRTTGQPGTG RRALKMGSRR AGAGKQGRAE TMLAAMEERE KIERNAIGER  480
SPSNFNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	256	309	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	256	309	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-13	256	309	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	256	309	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	256	309	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	256	309	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	256	309	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	256	309	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	256	309	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	256	309	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	256	309	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	256	309	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269\|PubMed:25132385}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00261	DAP	Transfer from AT2G03500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10043304

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269\|PubMed:25132385}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002308314.1	1e-132	myb family transcription factor EFM
Swissprot	Q9ZQ85	1e-112	EFM_ARATH; Myb family transcription factor EFM
TrEMBL	B9H993	1e-130	B9H993_POPTR; Uncharacterized protein
STRING	Lus10043304	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5466	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	4e-85	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10043304

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]