PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10042572 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 174aa MW: 19734.1 Da PI: 10.4516 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.3 | 1.5e-14 | 1 | 44 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ErrRR+++N++f Lr+l+P +K++Ka+iL A+eY+k+L+ Lus10042572 1 MAERRRREKLNERFIVLRSLVPFV-----TKMDKASILGDAIEYLKQLR 44 58*********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.57E-12 | 1 | 48 | No hit | No description |
Pfam | PF00010 | 5.1E-12 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.206 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-19 | 1 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-19 | 1 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-16 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MAERRRREKL NERFIVLRSL VPFVTKMDKA SILGDAIEYL KQLRKKIQDL EAKNRQFEMD 60 PQRIGSGSEN KKMRTAAEAK RGKTPTKAKE TSVEVSIIEK DALLELECEH REGLLLDMML 120 KLREMRIEVT TVQSSLSDGV LVAELRAKVK ENGGGKKVSI VEVKRAINGI IQW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_B | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_E | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_F | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_G | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_I | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_M | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_N | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 7 | ERRRRE |
2 | 3 | 8 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10042572 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027189967.1 | 7e-69 | basic helix-loop-helix protein A isoform X2 | ||||
Swissprot | E3SXU4 | 2e-67 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | A0A392MJ73 | 1e-67 | A0A392MJ73_9FABA; Transcription factor TT8-like (Fragment) | ||||
TrEMBL | A0A3Q7YAT7 | 2e-67 | A0A3Q7YAT7_CICAR; basic helix-loop-helix protein A isoform X2 | ||||
STRING | Lus10042572 | 1e-120 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3637 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 8e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10042572 |
Publications ? help Back to Top | |||
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