PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041456
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 331aa    MW: 35592.1 Da    PI: 4.2132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041456genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.98e-16102148353
          AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                   +GVr++k +g+W+AeIr  +     +  r +lg+f taeeAa a++  ++++
  Lus10041456 102 PSGVRQRK-WGKWAAEIRNpF-----TkSRTWLGTFNTAEEAAHAYDTKKREF 148
                  68*****9.**********66.....34*******************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-10101145IPR001471AP2/ERF domain
PROSITE profilePS5103218.36101158IPR001471AP2/ERF domain
PRINTSPR003677.8E-8102113IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-15103148IPR016177DNA-binding domain
CDDcd000182.91E-21104142No hitNo description
Gene3DG3DSA:3.30.730.102.6E-22104154IPR001471AP2/ERF domain
SMARTSM003806.7E-17104164IPR001471AP2/ERF domain
PRINTSPR003677.8E-8124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSPVTPLPKV QMNTLSSAEG SLLGSKVRKV RVIYQDPYAT DSSDDESELF SAQAVNKKPK  60
RFVREISIPL AAAVSPSSTV EQQSSSQDSS KSVVKSSSRK WPSGVRQRKW GKWAAEIRNP  120
FTKSRTWLGT FNTAEEAAHA YDTKKREFDA TAADLTSDGS EKSKNSPAVV ADVSPSASKN  180
NPLRGSVSND NDSESAVSHS SSPASVVELD GLSKDGGFDL INEVGLDGLD AVPIVGDLEI  240
PDLSFIDEAL GSSCPVDQDL DLGLDFSNII DEFGRMYDDF CGLDEGLGVL GVQGDVQTEL  300
PDYDFDFGSE EFAYLDDHHQ QQPLNIALCP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041456
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082084.18e-88ethylene-responsive transcription factor ERF119
RefseqXP_020538111.18e-88ethylene-responsive transcription factor ERF119
TrEMBLA0A1L6CAY15e-87A0A1L6CAY1_9ROSI; AP2/ERF domain-containing transcription factor
STRINGLus100414560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.27e-32ERF family protein