PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10040585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C3H | ||||||||
Protein Properties | Length: 364aa MW: 39347.3 Da PI: 9.0934 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.9 | 1.3e-11 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+e+Cr+f+r G C+yG+rC++ H+ Lus10040585 4 KREPCRNFQR-GSCQYGERCRYLHV 27 89********.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.4E-6 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.793 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-5 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-8 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-9 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MPVKREPCRN FQRGSCQYGE RCRYLHVVQQ QPKQSNPFGF GSGQQQQQKQ QQSSNPFGFG 60 AKQQQFKPFE NKWSRSNPSD NGAGHAPSSS KHQPDSKSQA ANHTCTDPES CKRSIAEDFE 120 HEKPIWKLTC YGHARNGPCD VVGDISYEEL RAAAYEDAKR GINVQSIIER ERNLSNSKLV 180 EFQNLLQTLY VARSGSAVGM HGATTNGISP TSSSSAPLQV SSFNQLGPSL NTGFGARPPS 240 QVNNLFGQPS VFPNSTQNAG VFGTNNVASA NVPFGGQLDS QHHRSSFPNV AGFPTNSAVS 300 CGGSNLLSSS QSFTTQNPIS SNLNAEASSS LAVNSVEKEK ASGDRSIWSK ETWKPGEVKR 360 LVM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10040585 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021689229.1 | 1e-120 | zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
Refseq | XP_021689230.1 | 1e-120 | zinc finger CCCH domain-containing protein 16 isoform X2 | ||||
Swissprot | Q9FWS3 | 2e-69 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | A0A0D2V076 | 1e-114 | A0A0D2V076_GOSRA; Uncharacterized protein | ||||
STRING | Lus10040567 | 0.0 | (Linum usitatissimum) | ||||
STRING | Lus10040585 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4600 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 4e-61 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10040585 |