PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10040429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB_related | ||||||||
Protein Properties | Length: 631aa MW: 69967 Da PI: 4.23 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.7e-08 | 480 | 521 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +rW++++ +l++++++q+G++ + + + ++ Rt+ q+k+++ Lus10040429 480 MRWSKQDTDLFYEGIRQFGSD-LSMVQQLFP-ERTRRQIKNKFK 521 79*******************.*********.**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 8.6E-27 | 472 | 555 | No hit | No description |
SMART | SM00717 | 3.6E-6 | 478 | 526 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 480 | 523 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.79E-9 | 481 | 529 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.93E-5 | 481 | 522 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MDSELDPFID EFDEPAAPRA KPAVKFQPKA RPRKGKATSS AAAAPPVFAP PPPPLPPADI 60 TVSADVFLET DAVHDLVTQP TGDSIRSANE EVLVPASIQE SVVFSAFGGE TEAKDPVASE 120 TVDGHVDSDR LQSEDLRERT DVVSEPVVES GTEENPQNDN VFLDDVESLV PPESSFVAPS 180 EARHESEGTM PAAEEEYVYD LSSLGFDDFV PSATAASELP MNSEQTGDEQ TCVLNEAGKN 240 SREDAPEVVK KNRDNNEKTL EKSKTSSLGS DGSVGKLSMQ LRKQSGGLAL NESDSVSVHD 300 DSSFLFEAPE CLGTNGDDDY EYRIEDSEDD GNVDAGGAST SKKKKAAKRS KKSASSEEKP 360 GRKRKKASDT SEQSEQKQLK KKFSHSTRRK KRYRNDELLK VPEDEIEFRS LTMRDIIFLA 420 EHKERLAAKD AKASLQTPST DKNTEEANDE EDNSESEEPV DVYETPLFNS HSFMNRTPTM 480 RWSKQDTDLF YEGIRQFGSD LSMVQQLFPE RTRRQIKNKF KTEERRHPFL LSDALQNPNS 540 DTTYFEKVYN KLAQAAADEG REPLDLTGEK EADLNLETNE EPGKNSEQDE QVTGQDPGDN 600 PDEAHSNEKI EEEEEVEDED DLFSSYKCEF * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 342 | 364 | KKKAAKRSKKSASSEEKPGRKRK |
2 | 360 | 366 | GRKRKKA |
3 | 361 | 365 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10040429 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ886109 | 1e-50 | HQ886109.1 Linum usitatissimum clone Contig2049 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10040429 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 1e-40 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10040429 |