PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040429
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 631aa    MW: 69967 Da    PI: 4.23
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040429genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-08480521245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +rW++++ +l++++++q+G++  + + + ++  Rt+ q+k+++ 
      Lus10040429 480 MRWSKQDTDLFYEGIRQFGSD-LSMVQQLFP-ERTRRQIKNKFK 521
                      79*******************.*********.**********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159638.6E-27472555No hitNo description
SMARTSM007173.6E-6478526IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-5480523IPR009057Homeodomain-like
SuperFamilySSF466894.79E-9481529IPR009057Homeodomain-like
CDDcd001673.93E-5481522No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MDSELDPFID EFDEPAAPRA KPAVKFQPKA RPRKGKATSS AAAAPPVFAP PPPPLPPADI  60
TVSADVFLET DAVHDLVTQP TGDSIRSANE EVLVPASIQE SVVFSAFGGE TEAKDPVASE  120
TVDGHVDSDR LQSEDLRERT DVVSEPVVES GTEENPQNDN VFLDDVESLV PPESSFVAPS  180
EARHESEGTM PAAEEEYVYD LSSLGFDDFV PSATAASELP MNSEQTGDEQ TCVLNEAGKN  240
SREDAPEVVK KNRDNNEKTL EKSKTSSLGS DGSVGKLSMQ LRKQSGGLAL NESDSVSVHD  300
DSSFLFEAPE CLGTNGDDDY EYRIEDSEDD GNVDAGGAST SKKKKAAKRS KKSASSEEKP  360
GRKRKKASDT SEQSEQKQLK KKFSHSTRRK KRYRNDELLK VPEDEIEFRS LTMRDIIFLA  420
EHKERLAAKD AKASLQTPST DKNTEEANDE EDNSESEEPV DVYETPLFNS HSFMNRTPTM  480
RWSKQDTDLF YEGIRQFGSD LSMVQQLFPE RTRRQIKNKF KTEERRHPFL LSDALQNPNS  540
DTTYFEKVYN KLAQAAADEG REPLDLTGEK EADLNLETNE EPGKNSEQDE QVTGQDPGDN  600
PDEAHSNEKI EEEEEVEDED DLFSSYKCEF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342364KKKAAKRSKKSASSEEKPGRKRK
2360366GRKRKKA
3361365RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040429
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8861091e-50HQ886109.1 Linum usitatissimum clone Contig2049 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100404290.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-40MYB_related family protein