PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040239
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 407aa    MW: 43254.2 Da    PI: 6.1918
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040239genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-1764109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
      Lus10040239  64 KGPWSPEEDGVLSQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 109
                      79******************************.***********985 PP
2Myb_DNA-binding55.11.7e-17116160147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd++++ a++ +G++ W+ I+r ++ gRt++ +k++w++ 
      Lus10040239 116 RKPFTDEEDQIIISAHAVHGNK-WAVISRLLP-GRTDNAIKNHWNST 160
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.09159110IPR017930Myb domain
SuperFamilySSF466891.35E-3061157IPR009057Homeodomain-like
SMARTSM007171.1E-1363112IPR001005SANT/Myb domain
PfamPF002494.2E-1664109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2665117IPR009057Homeodomain-like
CDDcd001671.75E-1366108No hitNo description
PROSITE profilePS5129426.61111165IPR017930Myb domain
SMARTSM007171.9E-16115163IPR001005SANT/Myb domain
PfamPF002494.5E-15116160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-24118164IPR009057Homeodomain-like
CDDcd001672.67E-12118161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGSLDGFDEA MREAAATEEE DEGTAGDLTE SPTGGCGGDS SELGGVSGGG GNGSGGGVVN  60
SRVKGPWSPE EDGVLSQLVS KFGARNWSLI ARGIPGRSGK SCRLRWCNQL DPGLKRKPFT  120
DEEDQIIISA HAVHGNKWAV ISRLLPGRTD NAIKNHWNST LRRRKTELPR GNKHASSFGM  180
MIENCNHDRR NASPDEETPS NMGDGNSVKS VEEIHYIVSP PKERPTTVPR PVARVGAFSV  240
YVPPGGSSKS GSIGSRQAPT QEPLVKASKP DFGICKLLED IRSEPIVPST CGFGCCSTPS  300
RGGHSRSSLL GPEFVDYEEP PCFSSQELIS IATDLNNIAW IKSGLENSTN SGELSGSHGI  360
IHQGPQFSVS QMGMPEQNLS KFVGTMTEAL PNHKSLAMRA EVESLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39631646107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040239
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626018.11e-132transcription factor MYB25
SwissprotO041925e-85MYB25_ARATH; Transcription factor MYB25
TrEMBLA0A2C9V2C91e-131A0A2C9V2C9_MANES; Uncharacterized protein
STRINGLus100402390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.14e-94myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]