PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10037668 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRF | ||||||||
Protein Properties | Length: 237aa MW: 26323.2 Da PI: 8.9857 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.3 | 1.5e-24 | 65 | 108 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk + Lus10037668 65 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKATV 108 79**************************************9765 PP | |||||||
2 | QLQ | 62.7 | 9.6e-22 | 16 | 50 | 1 | 35 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 s+FTa+Q+q+L++Q+l+yKy+++++P+Pp+Ll ++ Lus10037668 16 SPFTATQWQELENQALIYKYMVSGLPIPPQLLSPL 50 89******************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-11 | 16 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.624 | 17 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.6E-16 | 17 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.668 | 65 | 109 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.2E-20 | 66 | 106 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MMSTRTTNSN SSSCSSPFTA TQWQELENQA LIYKYMVSGL PIPPQLLSPL TWGSCFQVGF 60 SKKTDPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKATVDV SSSSSYAQNV 120 LSNVNAVGGI NQYGQSALFM DSAANSVSSP CQVHLPDYNR YVHGVKVEDN MQHQLSSSSS 180 SSKGYYCSPQ SDLQSFPYPS MRPISYSHET QKPLHQFFGG TTDHSWLDLA SSSRPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10037668 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835002.1 | 8e-51 | PREDICTED: growth-regulating factor 5-like isoform X3 | ||||
TrEMBL | A0A2I4FTN4 | 2e-49 | A0A2I4FTN4_JUGRE; growth-regulating factor 5-like isoform X3 | ||||
STRING | Lus10037668 | 1e-176 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9228 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-42 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Lus10037668 |