PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10037550

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 451aa MW: 50378.2 Da PI: 6.1301

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10037550	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1.1e-10	164	204	3	43
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + k++rr+++NReAAr+sR RKka++++Le +L + + Lus10037550 164 SEKVQRRLAQNREAARKSRIRKKAYVKQLESSRLKLIQLEQ 204 6799**************************86655555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.3E-8	160	210	No hit	No description
SMART	SM00338	4.5E-6	162	225	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.025	164	208	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-7	165	198	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.5E-7	166	209	No hit	No description
CDD	cd14708	1.17E-20	166	216	No hit	No description
PROSITE pattern	PS00036	0	169	184	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.4E-28	252	327	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MAMHGSRCYV ILFLFGLEIR SFPDADSSSS SCSKVFESLT IFSLLGSLVL VAGNFLSAVL 60 DGFCLKSKGT RLAISETTMN SPTQFVALGG GMEMYEHVHQ LSMWGESLFK SNGSPNALTS 120 ILIPNTSPSL FISPDIKFDN QSEDTSHGTP GVLTNYEQEV TKSSEKVQRR LAQNREAARK 180 SRIRKKAYVK QLESSRLKLI QLEQELDKAR QQGSYIDNAV EGSNVGFNSA INSGIATFEM 240 EYVNWLEEQQ RHVSELRTAL NSDISDREIH VFVDASLNHY YELFRMKAAA SKADVFYVMY 300 GLWKSSAERF FLWIGGFRPS ELIKILRPQI EPLAEPQLQD ICNLGQLCQQ AEDALSQGME 360 RLQQTLAQSV ADGQLGEASY SPQIDTAMEK LDSLVRFVRQ ADHLRKVALV QVSQILTPRQ 420 AARGLQALGE YFDKLRALSQ VWETNVREPS *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MAMHGSRCYV ILFLFGLEIR SFPDADSSSS SCSKVFESLT IFSLLGSLVL VAGNFLSAVL  60
DGFCLKSKGT RLAISETTMN SPTQFVALGG GMEMYEHVHQ LSMWGESLFK SNGSPNALTS  120
ILIPNTSPSL FISPDIKFDN QSEDTSHGTP GVLTNYEQEV TKSSEKVQRR LAQNREAARK  180
SRIRKKAYVK QLESSRLKLI QLEQELDKAR QQGSYIDNAV EGSNVGFNSA INSGIATFEM  240
EYVNWLEEQQ RHVSELRTAL NSDISDREIH VFVDASLNHY YELFRMKAAA SKADVFYVMY  300
GLWKSSAERF FLWIGGFRPS ELIKILRPQI EPLAEPQLQD ICNLGQLCQQ AEDALSQGME  360
RLQQTLAQSV ADGQLGEASY SPQIDTAMEK LDSLVRFVRQ ADHLRKVALV QVSQILTPRQ  420
AARGLQALGE YFDKLRALSQ VWETNVREPS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10037550

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012075186.1	0.0	transcription factor TGA1
Refseq	XP_020535956.1	0.0	transcription factor TGA1
Refseq	XP_020535957.1	0.0	transcription factor TGA1
Swissprot	Q39237	1e-154	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A067KGJ6	0.0	A0A067KGJ6_JATCU; Uncharacterized protein
STRING	Lus10037550	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-156	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10037550

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]