PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10037487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 24479.6 Da PI: 9.4878 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.5e-20 | 69 | 117 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++G+r ++ +g+W+AeIrd + + +r++lg++ taeeAa+a+++a+k+++g Lus10037487 69 VRGIRHRP-WGKWAAEIRDpF-----KgTRVWLGTYNTAEEAARAYDEAAKRIRG 117 79***888.**********55.....45************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.064 | 68 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 69 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.3E-14 | 69 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 69 | 125 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.21E-29 | 70 | 125 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 70 | 126 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-32 | 70 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MCGGAIISGF VDQKSGRRLK AKELWSEIDT FSDFIGFDFP VADTKPNTIP RVLSSKDVAG 60 PEKSSDAAVR GIRHRPWGKW AAEIRDPFKG TRVWLGTYNT AEEAARAYDE AAKRIRGDKA 120 KLNFPSAAVD RKSPPRAESG ASSFSPPSAK KQRCFSVDSA PVETALPPPP PPPSLACGGF 180 GFEETEVSGG AYELKKQISS LESFLELEPE KNAAALPVVN GGGQRRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-20 | 70 | 125 | 4 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-20 | 70 | 125 | 7 | 63 | ATERF1 |
3gcc_A | 6e-20 | 70 | 125 | 7 | 63 | ATERF1 |
5wx9_A | 2e-19 | 70 | 126 | 16 | 73 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10037487 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593495.1 | 7e-62 | ethylene-responsive transcription factor RAP2-3-like | ||||
Swissprot | P42736 | 2e-46 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A2C9UCT2 | 2e-60 | A0A2C9UCT2_MANES; Uncharacterized protein | ||||
STRING | Lus10037487 | 1e-163 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-32 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10037487 |