PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10035583 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 229aa MW: 26433.1 Da PI: 8.6386 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.6e-19 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +L+++lgL rq+ vWFqNrRa++k Lus10035583 58 KKKRLTNHQLESLETNFQEEIKLDPDRKMKLSRELGLHPRQIAVWFQNRRARWK 111 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114 | 9.6e-37 | 57 | 147 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+++q+++LE++F+ee kL+p+rK++l+reLgl+prq+avWFqnrRAR+k+kqlE+ y++Lk ++d +++e+++L++ev +Lre l Lus10035583 57 QKKKRLTNHQLESLETNFQEEIKLDPDRKMKLSRELGLHPRQIAVWFQNRRARWKAKQLERLYDSLKLEFDCVSKEKHKLQEEVMKLREML 147 69**************************************************************************************877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.42E-19 | 35 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.601 | 53 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 56 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.45E-14 | 57 | 114 | No hit | No description |
Pfam | PF00046 | 1.2E-16 | 58 | 111 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-20 | 59 | 120 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.1E-5 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.1E-5 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.0E-8 | 114 | 147 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDMKQLAEAA AYHHQQQQGM TMSPATSSEK TMSYGSSSCG SYAANQQHQM MMMMMDQKKK 60 RLTNHQLESL ETNFQEEIKL DPDRKMKLSR ELGLHPRQIA VWFQNRRARW KAKQLERLYD 120 SLKLEFDCVS KEKHKLQEEV MKLREMLGEQ EGTMNKHQVS TAVYTDFSKM EESTSAGRGS 180 SRKMMIIGQH HMLTTRNENS HDMVVDEYNP SIVVSSPTYL SVLPSYNP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 113 | RRARWKAKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10035583 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018863.1 | 2e-61 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A2P5C532 | 3e-60 | A0A2P5C532_PARAD; Octamer-binding transcription factor | ||||
STRING | Lus10035583 | 1e-171 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 3e-44 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Lus10035583 |