PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10035330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C3H | ||||||||
Protein Properties | Length: 477aa MW: 51609.4 Da PI: 8.156 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.3 | 7.1e-10 | 58 | 84 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++r+G C yG +C+++H++ Lus10035330 58 PGEPDCVYYLRNGVCGYGVNCRYNHPQ 84 5789*********************97 PP | |||||||
2 | zf-CCCH | 37.1 | 5.4e-12 | 105 | 129 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ Lus10035330 105 EPDCGYYLKTGTCKYGSTCKYHHPK 129 789********************96 PP | |||||||
3 | zf-CCCH | 28.2 | 3.3e-09 | 151 | 174 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+ + CkF+H++ Lus10035330 151 KSCPYYMRTGACKFQGACKFHHPQ 174 56********************97 PP | |||||||
4 | zf-CCCH | 38.3 | 2.3e-12 | 301 | 326 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tG+CkyG+ Ck++H++ Lus10035330 301 DQPECRHFMNTGICKYGSDCKYHHPK 326 689*********************96 PP | |||||||
5 | zf-CCCH | 34.3 | 4e-11 | 347 | 373 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC++++ +G+Ck+G++C++ H++ Lus10035330 347 PGQALCSNYSTYGICKFGSNCRYDHPF 373 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.746 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 57 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-7 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 62 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.295 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-5 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 105 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 107 | 130 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-4 | 108 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-6 | 146 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.906 | 147 | 175 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 149 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-7 | 150 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.136 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 299 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-10 | 301 | 326 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 302 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 305 | 326 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.446 | 346 | 374 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-5 | 346 | 372 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.4E-6 | 346 | 373 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-8 | 348 | 373 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-4 | 351 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MPDTNTNTRQ QTKNNNAGPN QSSDNIEEAI RRLKIHDDQE KGGGGGDVND SGPYPDRPGE 60 PDCVYYLRNG VCGYGVNCRY NHPQYAAQVT KGSQFKEELP ERVGEPDCGY YLKTGTCKYG 120 STCKYHHPKD RNGAGPVSYN LLGLPMRQDE KSCPYYMRTG ACKFQGACKF HHPQPASLEA 180 GVPLAGLSTY GSTGSSLIPT AGLPYVGGIP AWSMPRVPYM PAPRLETPQA FAPLYISPSQ 240 GIPPPAQGWN TYVGNVSPMS SPSILGSNLV FNSRNHDSAP SNGQIHLMSS SLTSNLPQRP 300 DQPECRHFMN TGICKYGSDC KYHHPKERTV HQLATNPAAP LGLPSRPGQA LCSNYSTYGI 360 CKFGSNCRYD HPFTGYPYSY SLTVPPLSVL DPSMVTYPPR MSEPPLTAPP TKVYYNNNGA 420 RNTKPQYQMN AGNNTKKTIA ATTTTTPPSD EATDTTADPS PPPHSSSKAS SEASHD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10035330 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002528968.1 | 0.0 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
TrEMBL | B9SSJ9 | 0.0 | B9SSJ9_RICCO; Zinc finger protein, putative | ||||
STRING | Lus10035330 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-110 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10035330 |