PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035076
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 317aa    MW: 34936.9 Da    PI: 8.2699
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035076genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-1972121255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +gr++AeIrdp+    +  r +lg+f+tae+Aa+a++ a+++++g
  Lus10035076  72 RYRGVRRRP-WGRYAAEIRDPV----SkERRWLGTFDTAEDAARAYDLAARNMRG 121
                  59*******.**********64....34999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-2972128IPR001471AP2/ERF domain
PfamPF008473.4E-1272121IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2172129IPR016177DNA-binding domain
CDDcd000187.73E-3072128No hitNo description
PROSITE profilePS5103222.86672129IPR001471AP2/ERF domain
SMARTSM003803.2E-3272135IPR001471AP2/ERF domain
PRINTSPR003676.2E-107384IPR001471AP2/ERF domain
PRINTSPR003676.2E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEEAFRKLNG MTTTSSPPEY PYLLYPTPTN PLHRHHRHIS SCMSSSATKR TPPPPAAATI  60
AVANGGGGVT IRYRGVRRRP WGRYAAEIRD PVSKERRWLG TFDTAEDAAR AYDLAARNMR  120
GMKARTNFVY PSDVPPLPPA DPHCFCSHHH HRFPPFTHFS KHHVSTVCSP VINNHHHHHN  180
TASTLHHHHP ILAATPPPQL RTNGGEIDFL NSSSSSSSTA VSLSPPTPGS SAVPAPSEDK  240
YCMEFFPQEA SGSSGLLEEV IQGFFPKPPE KELSMIRNDE ATSHDVGSWS RSYEGRMLGG  300
GDDYHGGYIN YYNQSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1964128371Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100350760.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-14DORNROSCHEN-like