PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035043
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 359aa    MW: 39341.8 Da    PI: 6.5182
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035043genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.64.4e-31218273156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k r++W+peLH+rF++a++qLGGs +AtPk+i+elmkv+gLt+++vkSHLQk+Rl+
  Lus10035043 218 KRRRCWSPELHRRFLHALQQLGGSYVATPKQIRELMKVDGLTNDEVKSHLQKFRLH 273
                  689***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.128215275IPR017930Myb domain
SuperFamilySSF466897.84E-18216276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-27216276IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-26218273IPR006447Myb domain, plants
PfamPF002491.1E-6220270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDFPDQKKRS NEYVGALEEE RRKIMMFQRE LPLSLELVTQ AIEACRRELS GTTTEHDKSD  60
CSEQTSGECP VTEEFIPIIK PNSSSCDGED ENENDYEKKR PLKRTRSKSD WLRSVQLWNQ  120
PPDPPSPNQA VPRKALVTEV KRNGAFQRFQ KEKSNGDDNI TVVPAAVVSA PPSKVLLPSA  180
MSSTADATPT AAGTSSVVSD GGNKQKEDED KEGQGKRKRR RCWSPELHRR FLHALQQLGG  240
SYVATPKQIR ELMKVDGLTN DEVKSHLQKF RLHTRRPSHG VQNGCNPAGG PQFVVVGGIW  300
VPPSIPDAPA PVDTAEKQPG GNSDDDLLPE GSEEVGDRSC SPSTSSSIHH TPTSSSAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220KRKRRR
2216220RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035043
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616746.11e-117transcription factor HHO3-like
SwissprotQ8VZS31e-91HHO2_ARATH; Transcription factor HHO2
TrEMBLA0A2C9VQR91e-116A0A2C9VQR9_MANES; Uncharacterized protein
STRINGLus100350430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.15e-92G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]
  2. Sun X, et al.
    The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides.
    J. Exp. Bot., 2018. 69(7): p. 1749-1764
    [PMID:29385617]