PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10034652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | Dof | ||||||||
Protein Properties | Length: 274aa MW: 29922.8 Da PI: 5.3278 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.7 | 5.2e-38 | 23 | 82 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ ++cprCds ntkfCyynny+lsqPr+fCk+CrryWt+GG lrnvPvGgg+rk k+s Lus10034652 23 HNQPVNCPRCDSVNTKFCYYNNYNLSQPRHFCKSCRRYWTNGGVLRNVPVGGGCRKPKRS 82 57899***************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-27 | 23 | 81 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-32 | 25 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.134 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 29 | 65 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MQDIHSIGGG ARFFAGDRRL RPHNQPVNCP RCDSVNTKFC YYNNYNLSQP RHFCKSCRRY 60 WTNGGVLRNV PVGGGCRKPK RSKPKQNPDS TSAVVSTADF TTQPPEDQLN SPDSHSSSES 120 SSLSATATEV ISVGNYSISE QNNKLIGDSS LNPSFETASF LVQGGECGMF QFQLQEMGSI 180 TSLTTSRAKE TPSFDTPLSQ GQSKDEEEWR MQGMIDPTIP DEYLTVLQSG RSSGAAGFGP 240 LDWNEAGGGG GYFDLPPSGV DHVYWSQSQW NYD* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10034652 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB087851 | 3e-33 | AB087851.1 Pisum sativum PsDof6 mRNA for DNA binding with one finger 6 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614624.1 | 3e-64 | dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A2C9VP18 | 7e-63 | A0A2C9VP18_MANES; Uncharacterized protein | ||||
STRING | Lus10034652 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-47 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Lus10034652 |