PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10034612

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 474aa MW: 51487.2 Da PI: 5.992

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10034612	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	120	142	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+ +++ ++ H ++ Lus10034612 120 FECPICGQAYRSEEDVSAHVESC 142 89*****************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	4.4E-8	26	53	No hit	No description
CDD	cd09212	8.60E-20	191	271	No hit	No description
SMART	SM00580	1.9E-16	192	256	IPR018997	PUB domain
SuperFamily	SSF143503	1.31E-17	192	257	IPR018997	PUB domain
Pfam	PF09409	2.0E-14	194	255	IPR018997	PUB domain
SuperFamily	SSF54236	1.45E-11	338	448	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	4.4E-8	352	415	No hit	No description
PROSITE profile	PS50033	10.095	364	448	IPR001012	UBX domain
Pfam	PF00789	8.5E-5	364	414	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MDDMKDKFKG FVKKVNTQLS SSSSSGKFKG QGRVLGTNSS SSSSSSDSSN SVYARFSQPV 60 NPKPTSNPSS NSNSKPSPPK RSAPTSSSAP IPKPANGFDA FGPLITSSER SKNGYSLNVF 120 ECPICGQAYR SEEDVSAHVE SCVTEGVRVV DVTSGGGDDN INAVSDGKID EEASFLDESS 180 VAAYLSGKPP EGSVEVVLRL FRNIVKDPEN VKFRRVRMGN PKIREAVTDV AGGVELLELA 240 GFELKEEGGE MWALMEDVPG KERIGLISKV IGFLEPRKVE NIKASVVPVE EDQPAERKKI 300 DRQIKVFFAV SENVASKIEV PDSFYNLSAI ELKSEADMRK KKLAESQLLI PRSFREKQAK 360 AARKKYTRTI VRIQFPDGVV LQGVFAPWEP TTALYEFVGS ALKDSSLEFE LMHPVIVKRR 420 VIPHSAAAGG RSITLDDEDL VPSALIKFKP IETDSSVFTG LSNELLEISE PLT*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MDDMKDKFKG FVKKVNTQLS SSSSSGKFKG QGRVLGTNSS SSSSSSDSSN SVYARFSQPV  60
NPKPTSNPSS NSNSKPSPPK RSAPTSSSAP IPKPANGFDA FGPLITSSER SKNGYSLNVF  120
ECPICGQAYR SEEDVSAHVE SCVTEGVRVV DVTSGGGDDN INAVSDGKID EEASFLDESS  180
VAAYLSGKPP EGSVEVVLRL FRNIVKDPEN VKFRRVRMGN PKIREAVTDV AGGVELLELA  240
GFELKEEGGE MWALMEDVPG KERIGLISKV IGFLEPRKVE NIKASVVPVE EDQPAERKKI  300
DRQIKVFFAV SENVASKIEV PDSFYNLSAI ELKSEADMRK KKLAESQLLI PRSFREKQAK  360
AARKKYTRTI VRIQFPDGVV LQGVFAPWEP TTALYEFVGS ALKDSSLEFE LMHPVIVKRR  420
VIPHSAAAGG RSITLDDEDL VPSALIKFKP IETDSSVFTG LSNELLEISE PLT*

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10034612

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021687190.1	0.0	plant UBX domain-containing protein 2-like
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A2P2JET9	0.0	A0A2P2JET9_RHIMU; Uncharacterized protein
STRING	Lus10034612	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Link Out ? help Back to Top
Phytozome	Lus10034612

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]