PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033488
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 202aa    MW: 22433.9 Da    PI: 4.9655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033488genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10101142854
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  + r+RR+ri +++  L++l+P       +K++ a++Le+Av+Y+k L
  Lus10033488 101 AARNRRQRISEKIRILQRLVPGG-----TKMDTASMLEEAVRYLKFL 142
                  569******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.10493142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1299157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1299148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-1299147No hitNo description
SuperFamilySSF474593.14E-1499154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-8102142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDINQSHPWI NHDQPQTEPI FDPFSSTFGL DHNLIINHQQ EDGGDQEEEL DGDQEEEEEL  60
GALKEMMYRM AAMQPVEIDP TSIRKPGRRN VRISDDPQSV AARNRRQRIS EKIRILQRLV  120
PGGTKMDTAS MLEEAVRYLK FLKRQIRLLQ QTDNHITTRL TPSLDDGGGF GIAPANGGGI  180
HIGGSNVGGG DELGCFSNHH A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033488
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022978004.13e-57transcription factor IND-like
TrEMBLA0A1R3GGC01e-52A0A1R3GGC0_COCAP; Uncharacterized protein (Fragment)
STRINGLus100334881e-147(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.16e-44bHLH family protein