PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10033441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRF | ||||||||
Protein Properties | Length: 433aa MW: 48734.3 Da PI: 9.2353 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 6.9e-25 | 89 | 132 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Lus10033441 89 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 132 79***************************************997 PP | |||||||
2 | QLQ | 57.3 | 4.6e-20 | 10 | 44 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l++Ky+a++ P+P++Ll+ i+ Lus10033441 10 PFTATQWQELEHQALIFKYMASGIPIPHDLLFTIK 44 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-11 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.927 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.9E-15 | 10 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-20 | 90 | 132 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MSGRSSSRFP FTATQWQELE HQALIFKYMA SGIPIPHDLL FTIKRSSSSS SSSSCLDSSS 60 SLLSSKLFPS QSPHIGWSCF QLGLGRKIDP EPGRCRRTDG KKWRCSKEAY PDSKYCERHM 120 HRGKNRSRKP VEVAATQQQS PLITPLTAKN SSSPPTLLQY PHTSLSLLSS SSSTTTEHQS 180 HQINHHYQHP TPPSGSYNNH HHLFLSSSHA AAVRPQQTND STNLLLDSAG YYSHSNTDYR 240 RNRSIYALKE EVDEHAFFSE TSGSIRSSEE AWRLSPLAIN SSSSSSSSSS SSKQRSSSHQ 300 HQHHHQELQN QNQNQKNDYY SNYLQLQSSD NIDSCTTKNQ NNNGCYIDAA GKSSQSMMRF 360 DRVVNSNEPQ NQKRVHRFFD EWPPRNKESA SWLQLDDKSS LNNTTLSISI PNSTSTMDLP 420 IFGSRTSYHQ QQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10033441 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468035 | 4e-43 | AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence. | |||
GenBank | AP009846 | 4e-43 | AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458797.1 | 1e-124 | growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A2K2A2B4 | 1e-120 | A0A2K2A2B4_POPTR; Uncharacterized protein | ||||
STRING | Lus10033441 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-49 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Lus10033441 |