PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031656
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 185aa    MW: 20254.7 Da    PI: 5.804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031656genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-172877155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+ +l+g
  Lus10031656 28 PKYRGIR--SRSGKWVSEIREPKK---TTRIWLGTYPTPEKAAAAYDVAAIALKG 77
                 79****6..668*********854...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.46E-162887No hitNo description
PfamPF008474.6E-102877IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-182987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-262986IPR001471AP2/ERF domain
SMARTSM003806.8E-302991IPR001471AP2/ERF domain
PROSITE profilePS5103219.7442985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAANQPQDNA PPPSPTQQQS PPSIRKQPKY RGIRSRSGKW VSEIREPKKT TRIWLGTYPT  60
PEKAAAAYDV AAIALKGPHT PLNFPTSFYS YPIPATTSPS DIRSAAARAA AQIQASSSQG  120
PVVRAQEEEY VDMEDMEDML NMPNLLLEMA GGMMVSPPRM HDTAPYGDSP ENSEGESVWS  180
YRQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1226881175Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022892142.15e-57ethylene-responsive transcription factor ERF025
SwissprotQ9CAN93e-44ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A1U8NDA21e-53A0A1U8NDA2_GOSHI; ethylene-responsive transcription factor ERF027-like
STRINGLus100316561e-132(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-33ERF family protein