PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031652
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 175aa    MW: 18911.1 Da    PI: 4.5809
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031652genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-172170155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGVr +  +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+ +l+g
  Lus10031652 21 SRYKGVRIR--SGKWVSEIREPKK---TTRIWLGTYPTPEMAAAAYDVAAIALKG 70
                 79****965..5*********854...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-192180IPR016177DNA-binding domain
CDDcd000188.05E-192180No hitNo description
PfamPF008476.4E-112170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-262279IPR001471AP2/ERF domain
PROSITE profilePS5103219.8092278IPR001471AP2/ERF domain
SMARTSM003804.1E-302284IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAANDSPPPP YPNYQQPPPS SRYKGVRIRS GKWVSEIREP KKTTRIWLGT YPTPEMAAAA  60
YDVAAIALKG PNTTLNFPES FRSYPTPASN SPSDIRAAAL IPSKPAQFGQ ASGSSTSRPA  120
EDYMDVEDML DMPNLLVDMA GGMMVSPPRM DNTASYGDSP DNSQGDSLWS YDDK*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031652
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022892142.11e-55ethylene-responsive transcription factor ERF025
SwissprotQ9FJ904e-45ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A328E5278e-54A0A328E527_9ASTE; Uncharacterized protein
TrEMBLA0A484KJB08e-54A0A484KJB0_9ASTE; Uncharacterized protein
STRINGLus100316521e-122(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-47ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]