PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10030493

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HD-ZIP

Protein Properties

Length: 270aa MW: 30152.5 Da PI: 7.2388

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10030493	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	9.2e-18	50	103	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Lus10030493 50 KKRRLNMEQVRTLEKNFELANKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 103 456899***********************************************9 PP
2	HD-ZIP_I/II	131	4.7e-42	49	141	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++ +k++n++L++++++L++e+++ Lus10030493 49 EKKRRLNMEQVRTLEKNFELANKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEGVKADNDSLQSQNQKLHAEIMA 141 69**************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.05E-19	44	107	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	45	105	IPR001356	Homeobox domain
SMART	SM00389	2.0E-16	48	109	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-15	50	103	IPR001356	Homeobox domain
CDD	cd00086	4.40E-16	50	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-19	52	112	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	76	85	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	80	103	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	85	101	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.0E-16	105	145	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MASFLGKRSM SCSGINDAAN NNNNCHDQEG GGLMNGEEDF SDDGSMAGEK KRRLNMEQVR 60 TLEKNFELAN KLEPERKMQL ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YDVLKRQFEG 120 VKADNDSLQS QNQKLHAEIM ALKGRGPTHE AINLNKETEG SCSNRSESSS DIKLDISRSN 180 TPAAIDSPLS STPNGRPFFP TTSSSHHHNV RPPLVPSNGV AQLFHNNSTR PQSASVDQIV 240 KEESLTTMFC GIDDQSVGFW PWLEPQHFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	105	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10030493

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002520111.1	1e-129	homeobox-leucine zipper protein ATHB-13
Refseq	XP_015575250.1	1e-129	homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-96	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	B9S292	1e-128	B9S292_RICCO; Homeobox protein, putative
STRING	Lus10030493	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1271	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	8e-92	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10030493

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]