PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 254aa MW: 29224.1 Da PI: 5.0243 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.4 | 1.4e-19 | 48 | 100 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ Fe++ + +++ +LAk+lgL+ rqV +WFqN+Ra++k Lus10030214 48 KRRFTDEQIKSLESIFESETRLEPRKKVQLAKELGLQPRQVAIWFQNKRARWK 100 679*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.7 | 8.7e-40 | 48 | 138 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 krr+++eq+k+LE+ Fe+e++Lep++Kv+la+eLglqprqva+WFqn+RAR+k+kqlE+dy L+++y++l+++ e+L+ke+++L+++l++ Lus10030214 48 KRRFTDEQIKSLESIFESETRLEPRKKVQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYGILRANYNRLASRFESLKKEKQALAAQLQK 138 9***************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.394 | 42 | 102 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-16 | 44 | 106 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-18 | 44 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.12E-15 | 48 | 103 | No hit | No description |
Pfam | PF00046 | 5.1E-17 | 48 | 100 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-20 | 49 | 108 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.8E-6 | 73 | 82 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 77 | 100 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.8E-6 | 82 | 98 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.6E-18 | 102 | 143 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MFGEEEYYSS PPNSPDRYQS SSSTTSTTTT TTNPIRKKNN KNGNNYSKRR FTDEQIKSLE 60 SIFESETRLE PRKKVQLAKE LGLQPRQVAI WFQNKRARWK SKQLERDYGI LRANYNRLAS 120 RFESLKKEKQ ALAAQLQKLN ELMTENPRTE ETGHAETTYN SSEGESDNGV KDEKISLELK 180 AQSERERVGF IYEAENDSSI KVEYFGAEEA KLMSMVGGDG SLTSQEDWGS LDSDGVLFHD 240 QSTTDYQWWE FWT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030214 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU829790 | 3e-76 | EU829790.1 Linum usitatissimum clone LU0012B03 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002529960.2 | 1e-83 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-7 | ||||
Swissprot | P46897 | 6e-66 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A0A7CB71 | 2e-84 | A0A0A7CB71_JATCU; Homeobox 12 | ||||
STRING | Lus10030214 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-65 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Lus10030214 |
Publications ? help Back to Top | |||
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