PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10029808 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 116aa MW: 13417.2 Da PI: 12.1812 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 80.7 | 1.7e-25 | 38 | 88 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmk.vkgLtlehvkSHLQ 51 pr rWtp+LH +F++av++LGG++kAtPk+il++m+ v+gL ++hvkSHLQ Lus10029808 38 PRFRWTPQLHLHFIHAVHSLGGIHKATPKRILQAMNnVEGLKISHVKSHLQ 88 8**********************************549************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 35 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-18 | 38 | 91 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.23E-11 | 38 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-6 | 41 | 88 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MEDNIVNIHN HHRRRRSRWR RSSGGSGGAR PYNKSELPRF RWTPQLHLHF IHAVHSLGGI 60 HKATPKRILQ AMNNVEGLKI SHVKSHLQVP FFYHHSSSFS SSNHAQLDRS RIEFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-15 | 39 | 88 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-15 | 39 | 88 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-15 | 39 | 88 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-15 | 39 | 88 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-15 | 39 | 88 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-15 | 39 | 88 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-15 | 39 | 88 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-15 | 39 | 88 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-15 | 39 | 88 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-15 | 39 | 88 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-15 | 39 | 88 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-15 | 39 | 88 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10029808 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025981307.1 | 6e-25 | probable transcription factor KAN4 | ||||
Swissprot | Q700D9 | 3e-21 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A151U1Z6 | 3e-24 | A0A151U1Z6_CAJCA; Putative Myb family transcription factor At1g14600 family | ||||
STRING | Lus10029808 | 5e-79 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9186 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 1e-20 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10029808 |