PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029805
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 495aa    MW: 54097.4 Da    PI: 8.0396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029805genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.93.3e-17267313455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++     +K +Ka++L +A++Y+ksLq
  Lus10029805 267 VHNLSERRRRDRINEKMKALQELIPNS-----TKTDKASMLDEAIDYLKSLQ 313
                  6*************************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-20261325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.914263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-18266317No hitNo description
SuperFamilySSF474598.64E-21266339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-14267313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-19269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MQGRKPWWCS YRIFPPSFPN PIPIKSNTEK ESRAMNHHHN HYLADWSSFD QPDHLLSHKK  60
STGGDNNELV ELLWRDGQVV LQTQTPKRII NQNANNPLSD LIQDDETVSW INYPFPDTAA  120
AADETEFCSN VLSEFPNFPG GAPDPNEGIS KQLTNHQEVA GKECSVMTVG SSNRFPAPPT  180
QCFPSAAKKT PPFLERNTAA AGTSSSGGSG SGDGSTFSKI GGKRKRSLDF NEESECQSES  240
AELDRSSGLN KAVKLSKSGR RARAAEVHNL SERRRRDRIN EKMKALQELI PNSTKTDKAS  300
MLDEAIDYLK SLQLQLQVMW MGNGMAAQGV MFPGMQHYMS RLGMGMGLGM GLGMTGHPLP  360
HISGGIPLIN NHHQPSSSHS HQAVIPPTQL VNSHNNISSD HQIQHHNNHI SQAAAAVAAQ  420
AAFSDQYAQL MAFHLQPTPS STQAMNMFRF GSQTALQQQQ QQQQFRQNIM APPPPPPGTS  480
STGGPSTQII ASQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029805
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100298050.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.43e-43phytochrome interacting factor 3-like 6