PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10028032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 14799.8 Da PI: 10.4556 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.8e-18 | 31 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++kGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa ++l+g Lus10028032 31 KKFKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 81 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.72E-19 | 31 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-27 | 32 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 32 | 93 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-11 | 32 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-31 | 32 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.232 | 32 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MVKTDDHQAP ENNNNMVNKS TTKNKSSIMV KKFKGVRMRS WGSWVSEIRA PNQKTRIWLG 60 SYSTPEAAAR AYDAALLCLK GSAAAAPTLN FPTSSYAHYY TYTSSAAPMS PKSIPTPNTH 120 PAAPPPPRRQ CQHY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10028032 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173609.1 | 2e-31 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9SFE4 | 2e-32 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A0A2G3CLK5 | 7e-31 | A0A2G3CLK5_CAPCH; Ethylene-responsive transcription factor | ||||
STRING | Lus10028032 | 2e-95 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44830.1 | 2e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10028032 |
Publications ? help Back to Top | |||
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