PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10027413

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ERF

Protein Properties

Length: 185aa MW: 19556.8 Da PI: 4.5556

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10027413	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.8e-17	30	77	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr + +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+ +l+g Lus10027413 30 YKGVRIR--SGKWVSEIREPKK---TTRIWLGTYPTPEMAAAAYDVAAIALKG 77 9*965..5*****854...5*********************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.44E-18	28	87	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.7E-26	29	86	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.968	29	85	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-27	29	91	IPR001471	AP2/ERF domain
Pfam	PF00847	3.4E-10	30	77	IPR001471	AP2/ERF domain
CDD	cd00018	6.88E-17	30	87	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MAANKPDHPP PQPTQPAQSS SSTPSPASMY KGVRIRSGKW VSEIREPKKT TRIWLGTYPT 60 PEMAAAAYDV AAIALKGRET LLNFPSSIGS YPTPASTSPS DIRAAAHTAA AALVAPKPSS 120 GQASGEGRNL EEYMDVEDVL DMPNLLVEMA GGLMVSPPRM GDATLYGDSP DNSEGESLWS 180 YDEY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10027413

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016737007.1	2e-59	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	5e-43	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A1U8NDA2	4e-58	A0A1U8NDA2_GOSHI; ethylene-responsive transcription factor ERF027-like
STRING	Lus10027413	1e-130	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	5e-40	ERF family protein

Link Out ? help Back to Top
Phytozome	Lus10027413

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]