PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HSF | ||||||||
Protein Properties | Length: 166aa MW: 19218.1 Da PI: 9.9515 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.7 | 1.5e-32 | 16 | 118 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSS...........SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswseng...........nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y++++d+ +++++sw +n ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv e+ weF +++F+ Lus10026819 16 FLTKTYKLVDDPMTDHIVSWGSNDmndpmaammmmSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAAER---------WEFGNDYFR 103 9********************777789999999999****************************************999.........********* PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 kg k+ll++i+r+ks Lus10026819 104 KGAKQLLSHIHRRKS 118 *************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.3E-47 | 12 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.6E-33 | 13 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.98E-29 | 13 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.7E-28 | 16 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MQGLYNKGGG GVVAPFLTKT YKLVDDPMTD HIVSWGSNDM NDPMAAMMMM STFVVWRPPE 60 FARDLLPNYF KHNNFSSFVR QLNTYGFKKV AAERWEFGND YFRKGAKQLL SHIHRRKSPH 120 HYNDHHQHDF IFQLPHHHIF LPSPPPPPPA VHYVLSPATV QMMMR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-18 | 13 | 116 | 17 | 120 | Heat shock factor protein 1 |
5d5u_B | 2e-18 | 13 | 116 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-18 | 13 | 116 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-18 | 13 | 116 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10026819 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027368557.1 | 2e-57 | heat stress transcription factor B-4b-like | ||||
Swissprot | Q7XHZ0 | 2e-52 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | A0A061GTY1 | 5e-55 | A0A061GTY1_THECC; Heat shock transcription factor B4 | ||||
STRING | Lus10026819 | 1e-120 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1612 | 33 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 5e-51 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Lus10026819 |
Publications ? help Back to Top | |||
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