PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026477
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 351aa    MW: 38866.6 Da    PI: 9.3502
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026477genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-173382155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Lus10026477 33 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 82
                 78*******************......55************************997 PP
2AP240.37.8e-13125175155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV+ +k  grW+A+   +     +k+++lg ++++ eAa+a++ a+ k +g
  Lus10026477 125 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLYDSEIEAARAYDMAAIKCNG 175
                  79********.7******5553..2.26**********99**********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-163392IPR016177DNA-binding domain
CDDcd000182.07E-243392No hitNo description
PfamPF008471.5E-93382IPR001471AP2/ERF domain
SMARTSM003801.2E-313496IPR001471AP2/ERF domain
PROSITE profilePS5103217.6093490IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-173491IPR001471AP2/ERF domain
CDDcd000186.95E-24125185No hitNo description
SuperFamilySSF541712.88E-16125184IPR016177DNA-binding domain
PfamPF008475.6E-9125175IPR001471AP2/ERF domain
PROSITE profilePS5103214.961126183IPR001471AP2/ERF domain
SMARTSM003801.5E-30126189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-14126183IPR001471AP2/ERF domain
PRINTSPR003677.8E-6127138IPR001471AP2/ERF domain
PRINTSPR003677.8E-6165185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAEKIVAQVQ QQQQQQQKPP VKKNRRGPRS KSSQYRGVTF YRRTGRWESH IWDCGKQVYL  60
GGFDTAHSAA RAYDRAAIKF RGIDADINFN VSDYDDDISQ MSNYTKEEFV QILRRQSSGF  120
SRGSSKFRGV TLHKCGRWEA RMGQFLGKKY IYLGLYDSEI EAARAYDMAA IKCNGSEAVT  180
NFEPSSYDEE IISDAKPGDH NLDLNLGIAP PEAPEVKRVN SFCDPFCIQR NSNSASATMK  240
NPPQLSHLPL MGTEVLPTGP SVNPGFFPIS KERAMDKRVG AHPSLLNWAW KLQGPYGREN  300
HPLPLFSSAA SSGFSSSTIT TIPNSAVAAS AAVGAPPQLY FHNSAIQHYS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026477
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538231.11e-138ethylene-responsive transcription factor RAP2-7-like
SwissprotQ8H4431e-106AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A067K9U11e-137A0A067K9U1_JATCU; Uncharacterized protein
STRINGLus100264770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-83AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]