PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025599
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 138aa    MW: 15209.5 Da    PI: 8.8462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025599genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.0002137711554
                 HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +  +++  L++l+ +      +K + a++L +A+eYI+ L
  Lus10025599 37 KFGERIVLLQQLVSPY-----GKTDTASVLLEAMEYIHFL 71
                 5556777777877777.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.5062271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-72381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.11E-53276No hitNo description
SuperFamilySSF474595.89E-113288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MENKRSPCFL DQGNITSLST KRHKADPSVP MKDRKEKFGE RIVLLQQLVS PYGKTDTASV  60
LLEAMEYIHF LHDQVKVLSA PYLQTTPPPR MQGSDEYSLR SRGLCVVPVC LTAGVANSNG  120
ADLWAPTKTT NPISQLH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025599
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021688923.13e-71transcription factor bHLH153-like isoform X1
RefseqXP_021688924.13e-71transcription factor bHLH153-like isoform X1
RefseqXP_021688925.13e-71transcription factor bHLH153-like isoform X2
SwissprotQ7XJU21e-53BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2C9V2104e-69A0A2C9V210_MANES; Uncharacterized protein
STRINGLus100255992e-99(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.54e-56bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]