PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025404
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 271aa    MW: 30616.2 Da    PI: 8.1718
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025404genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.58.2e-1429119186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ + +L++a  ++  +l+rg+l++++W++v++ +       ++  r+ +qCk++ + ++k+yk +k++    +   +s++++fd+l+
  Lus10025404  29 CWSEEATATLVDAWGNRYLELNRGNLRQKDWKDVADTVnsihgLTKKTYRTDVQCKNRVDTIKKKYKVEKTRVAASNGAITSSWRFFDRLD 119
                  7*************************************99999899999**********************99999899999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2427121No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGDLTDSGTT PNPNANSSTS RPMPIREDCW SEEATATLVD AWGNRYLELN RGNLRQKDWK  60
DVADTVNSIH GLTKKTYRTD VQCKNRVDTI KKKYKVEKTR VAASNGAITS SWRFFDRLDS  120
LIGSNFSSSA KQLRQRESLS PSPPVGLPLN NYRRTTADPA MGRNSSPAAA AAAAAESESE  180
EEEEEKEEEV DEEGEEVRRL GKAIERFGEV YERVEGEKLR KMVELEKQRM KFAKDLEMER  240
MRMFSETQIQ LEKIKRGKKK QRTSGGNVDI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255261RGKKKQR
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025404
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303549.11e-111trihelix transcription factor ASIL2
SwissprotQ9LJG81e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLB9GW351e-110B9GW35_POPTR; Uncharacterized protein
STRINGLus100254040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.14e-53sequence-specific DNA binding transcription factors