PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024313
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family BBR-BPC
Protein Properties Length: 334aa    MW: 37447.3 Da    PI: 9.9089
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024313genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind389.74.5e-11913331301
    GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla. 92 
                  mdd g+re  r+k+ +++ a  + ++    +q+ms++aerda+i+ern+a+sekkaa+ erdmaflqrd+a+aern+al+erdn++++l+++ensl  
  Lus10024313   1 MDDGGHREngRHKPdQFKAAqsQWMQPPSMKQIMSIMAERDAAIHERNMAISEKKAAISERDMAFLQRDSAIAERNNALMERDNAIATLQYRENSLPn 98 
                  9*****999******9*96655778888999***************************************************************9878 PP

    GAGA_bind  93 ...salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkkkksekskkkvkkes 182
                     s++p+g+q+++g k+i++ qq+++  p++++ ++  re++ +++lp++ +++++++ k+ k + +a+ p +k +k   k+kk+s++ +k   ++ 
  Lus10024313  99 gnmSSCPTGCQISRGMKHIHHPQQHTHhlPHMDEATYSNREMQGNDSLPTSPEPTKSRRGKRAK-EPKATPPNKKSSKsprKAKKESDNLNKVMFTK- 194
                  8889********************766699*******************887666655554444.33333333333331113333333333222223. PP

    GAGA_bind 183 ader.......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiag 257
                                             sk+++k +d++ln++++De+t+P+PvCsCtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aRi+g
  Lus10024313 195 ---AiewkteqdmddggaedlnkqlitSKTDWKGQDIGLNQIAFDETTMPAPVCSCTGIFRQCYKWGNGGWQSSCCTTTLSMYPLPTVPNKRHARIGG 289
                  ...134567899************************************************************************************** PP

    GAGA_bind 258 rKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  rKmS++af+klL++Laa+G dls+pvDLk+hWAkHGtn+++ti+
  Lus10024313 290 RKMSGSAFSKLLSRLAADGNDLSHPVDLKHHWAKHGTNRYITIK 333
                  *******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.8E-1011333IPR010409GAGA-binding transcriptional activator
SMARTSM012261.9E-1701333IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDDGGHRENG RHKPDQFKAA QSQWMQPPSM KQIMSIMAER DAAIHERNMA ISEKKAAISE  60
RDMAFLQRDS AIAERNNALM ERDNAIATLQ YRENSLPNGN MSSCPTGCQI SRGMKHIHHP  120
QQHTHHLPHM DEATYSNREM QGNDSLPTSP EPTKSRRGKR AKEPKATPPN KKSSKSPRKA  180
KKESDNLNKV MFTKAIEWKT EQDMDDGGAE DLNKQLITSK TDWKGQDIGL NQIAFDETTM  240
PAPVCSCTGI FRQCYKWGNG GWQSSCCTTT LSMYPLPTVP NKRHARIGGR KMSGSAFSKL  300
LSRLAADGND LSHPVDLKHH WAKHGTNRYI TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024313
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613374.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613375.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613376.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613377.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613378.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613379.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-153BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A2C9VYP50.0A0A2C9VYP5_MANES; Uncharacterized protein
STRINGLus100243130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-146basic pentacysteine 6